miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 297 bits (150), Expect = 2e-80
Identities = 156/158 (98%)
Strand = Plus / Plus
Query: 3 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggatcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggatcc 74
Query: 63 acagccctatctatcaactgaaggataggtttgcggcttgcatatctcaggagctttatt 122
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 acagtcctatctatcaaccgaaggataggtttgcggcttgcatatctcaggagctttatt 134
Query: 123 gcctaatgttagatccctttttggattgaagggagctc 160
||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gcctaatgttagatccctttttggattgaagggagctc 172
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 109 bits (55), Expect = 1e-23
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 94 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 153
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 98 tgcggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaag 157
Query: 154 ggagctc 160
|||||||
Sbjct: 158 ggagctc 164
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 93.7 bits (47), Expect = 7e-19
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 3 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat-c 61
|||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||||| |
Sbjct: 15 gctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggatcc 74
Query: 62 cacagccctat 72
|||||||||||
Sbjct: 75 cacagccctat 85
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 79.8 bits (40), Expect = 1e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 3 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat-c 61
|||||||||||||||||||||| |||| ||||||||||| ||||||| | ||||||| |
Sbjct: 15 gctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggatcc 74
Query: 62 cacagccctatc 73
||||||||||||
Sbjct: 75 cacagccctatc 86
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 67.9 bits (34), Expect = 4e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga-tc 61
|||||||||||||||||||||| | |||| |||| |||| |||||| ||||||||| ||
Sbjct: 15 gctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggattc 74
Query: 62 cacagcccta 71
||||||||||
Sbjct: 75 cacagcccta 84
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 taggtttgcggcttgcatatctcaggagct 117
|||| |||||| ||||||||||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagct 137
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 46.1 bits (23), Expect = 1e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 3 gctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga-tc 61
|||||||||||||||| ||| | ||| | || |||||| ||||||| | ||||||| ||
Sbjct: 15 gctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggattc 74
Query: 62 cacagccctatctat 76
| |||||||||||||
Sbjct: 75 ctcagccctatctat 89
