miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 119 bits (60), Expect = 6e-27
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 gggaatgctggctggctcgaagcttaagcaaagagtatcctaacatgaaacaactgttaa 60
||||||| |||||||||||||||||||||||||||| | || || ||||||||||||||
Sbjct: 7 gggaatgttggctggctcgaagcttaagcaaagagttttctctcaagaaacaactgttaa 66
Query: 61 ggcttcggaccaggcttcattccc 84
||||||||||||||||||||||||
Sbjct: 67 ggcttcggaccaggcttcattccc 90
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 taaggcttcggaccaggcttcattccc 84
|||||||||||||||||||||||||||
Sbjct: 74 taaggcttcggaccaggcttcattccc 100
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 taaggcttcggaccaggcttcattccc 84
|||||||||||||||||||||||||||
Sbjct: 91 taaggcttcggaccaggcttcattccc 117
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 aaggcttcggaccaggcttcattccc 84
||||||||||||||||||||||||||
Sbjct: 69 aaggcttcggaccaggcttcattccc 94
>RF00075;mir-166;ABXC01000087.1/360026-360107 4558:Sorghum bicolor
(sorghum)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 ggcttcggaccaggcttcattccc 84
||||||||||||||||||||||||
Sbjct: 53 ggcttcggaccaggcttcattccc 76
>RF00075;mir-166;AC096855.5/123486-123562 39947:Oryza sativa
Japonica Group
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 ggcttcggaccaggcttcattccc 84
||||||||||||||||||||||||
Sbjct: 48 ggcttcggaccaggcttcattccc 71
>RF00075;mir-166;ABEU01002839.1/114707-114612
145481:Physcomitrella patens subsp. patens
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 ttaaggcttcggaccaggcttcattccc 84
|||| |||||||||||||||||||||||
Sbjct: 63 ttaaagcttcggaccaggcttcattccc 90
>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
patens subsp. patens
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 ttaaggcttcggaccaggcttcattccc 84
|||| |||||||||||||||||||||||
Sbjct: 52 ttaaagcttcggaccaggcttcattccc 79
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gcttcggaccaggcttcattccc 84
|||||||||||||||||||||||
Sbjct: 62 gcttcggaccaggcttcattccc 84
>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gcttcggaccaggcttcattccc 84
|||||||||||||||||||||||
Sbjct: 67 gcttcggaccaggcttcattccc 89
>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gcttcggaccaggcttcattccc 84
|||||||||||||||||||||||
Sbjct: 67 gcttcggaccaggcttcattccc 89
>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
patens subsp. patens
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gcttcggaccaggcttcattccc 84
|||||||||||||||||||||||
Sbjct: 52 gcttcggaccaggcttcattccc 74
>RF00075;mir-166;ABEU01008046.1/36531-36607 145481:Physcomitrella
patens subsp. patens
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gcttcggaccaggcttcattccc 84
|||||||||||||||||||||||
Sbjct: 49 gcttcggaccaggcttcattccc 71
>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana (thale
cress)
Length = 146
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 cttcggaccaggcttcattccc 84
||||||||||||||||||||||
Sbjct: 119 cttcggaccaggcttcattccc 140
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 cttcggaccaggcttcattccc 84
||||||||||||||||||||||
Sbjct: 162 cttcggaccaggcttcattccc 183
