miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
           (castor bean)
          Length = 108

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 86  gtgttagattcacgcacaaactcg 109
           ||||||||||||||||||||||||
Sbjct: 75  gtgttagattcacgcacaaactcg 98





>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
           (castor bean)
          Length = 105

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 86  gtgttagattcacgcacaaactcg 109
           ||||||||||||||||||||||||
Sbjct: 72  gtgttagattcacgcacaaactcg 95





>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 86  gtgttagattcacgcacaaactcg 109
           ||||||||||||||||||||||||
Sbjct: 53  gtgttagattcacgcacaaactcg 76





>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 86  gtgttagattcacgcacaaactcg 109
           ||||||||||||||||||||||||
Sbjct: 53  gtgttagattcacgcacaaactcg 76





>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
           trichocarpa
          Length = 99

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 88  gttagattcacgcacaaactcg 109
           ||||||||||||||||||||||
Sbjct: 68  gttagattcacgcacaaactcg 89





>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
          Length = 115

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 88  gttagattcacgcacaaactcg 109
           ||||||||||||||||||||||
Sbjct: 84  gttagattcacgcacaaactcg 105