miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 188 bits (95), Expect = 9e-48
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 1 gatgttggctcggctcactcagacggcattggcgtgatgcaaagcatgcatgcgtgcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gatgttggctcggctcactcagacggcattggcgtgatgcaaagcatgcatgcgtgcttg 70
Query: 61 ctacctcacttgtgtttctgattgagccgtgccaatatc 99
||| |||||||||||||||||||||||||||||||||||
Sbjct: 71 ctagctcacttgtgtttctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 180 bits (91), Expect = 2e-45
Identities = 97/99 (97%)
Strand = Plus / Plus
Query: 1 gatgttggctcggctcactcagacggcattggcgtgatgcaaagcatgcatgcgtgcttg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 11 gatgttggctcggctcactcagacggcattggcgtgatgcaaagcatgcatgcgtgctcg 70
Query: 61 ctacctcacttgtgtttctgattgagccgtgccaatatc 99
||| |||||||||||||||||||||||||||||||||||
Sbjct: 71 ctagctcacttgtgtttctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 103 bits (52), Expect = 4e-22
Identities = 96/114 (84%), Gaps = 15/114 (13%)
Strand = Plus / Plus
Query: 1 gatgttggctcggctcactcagacggcattggcgtgatgcaaagcatgcatgcgtgc--- 57
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 11 gatgttggctcggctcactcagacggcattggcgtgatgcaaagcatacatgcgtacatg 70
Query: 58 ------------ttgctacctcacttgtgtttctgattgagccgtgccaatatc 99
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 71 acgatgcatgctttgctagctcacttgtgtttctgattgagccgtgccaatatc 124
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 74 gtttctgattgagccgtgccaatatc 99
||||||||||||||||||||||||||
Sbjct: 67 gtttctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 74 gtttctgattgagccgtgccaatatc 99
||||||||||||||||||||||||||
Sbjct: 67 gtttctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 74 gtttctgattgagccgtgccaatatc 99
||||||||||||||||||||||||||
Sbjct: 74 gtttctgattgagccgtgccaatatc 99
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 74 gtttctgattgagccgtgccaatatc 99
||||||||||||||||||||||||||
Sbjct: 100 gtttctgattgagccgtgccaatatc 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gatgttggctcggctcactcagac 24
||||||||||||||||||||||||
Sbjct: 11 gatgttggctcggctcactcagac 34
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 ttctgattgagccgtgccaatatc 99
||||||||||||||||||||||||
Sbjct: 102 ttctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 61 tctgattgagccgtgccaatatc 83
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 54 tctgattgagccgtgccaatatc 76
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 64 tctgattgagccgtgccaatatc 86
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 68 tctgattgagccgtgccaatatc 90
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 65 tctgattgagccgtgccaatatc 87
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatc 85
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 78 tctgattgagccgtgccaatatc 100
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgtgccaatatc 99
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 74 gtttctgattgagccgtgccaatatc 99
|||| |||||||||||||||||||||
Sbjct: 64 gtttttgattgagccgtgccaatatc 89
