miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 232 bits (117), Expect = 1e-60
Identities = 162/176 (92%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 3 gctccttatagttcaaacgagagttcagcagggtaaagaaaagctgctaagctatgaatc 62
|||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 15 gctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatggatc 74
Query: 63 ccataagccctaatccttattta--taaaaaggatttggttatatggcttacatatctca 120
|||||||||||||||||| | | ||||||||||||||||||||| || |||||||||
Sbjct: 75 ccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcatatctca 134
Query: 121 ggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctc 176
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 135 ggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctc 190
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 67.9 bits (34), Expect = 4e-11
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 112 catatctcaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 170
||||||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 130 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 188
Query: 171 gagctc 176
||||||
Sbjct: 189 gagctc 194
Score = 65.9 bits (33), Expect = 2e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 3 gctccttatagttcaaacgagagttcagcagggtaaagaaaagctgctaagctatgaatc 62
||||||| ||||||| ||| ||| |||||||| ||| ||||||||||||||||| |||
Sbjct: 15 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 74
Query: 63 ccataagcc 71
|||||||||
Sbjct: 75 ccataagcc 83
