miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC147962.1/85803-85682 39947:Oryza sativa Japonica
Group
Length = 122
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 ggtattggcgtgcctcaatccgaaggcatggctgattacaggcacctcgaccgatctagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggtattggcgtgcctcaatccgaaggcatggctgattacaggcacctcgaccgatctagc 70
Query: 61 gcatgcagccatgtttcttggattgagccgcgtcaatatc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gcatgcagccatgtttcttggattgagccgcgtcaatatc 110
>RF00643;MIR171_1;ABXC01000173.1/152883-152783 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 ggtattggcgtgcctcaatccgaaggcatggctgatt 37
|||||||||| |||||||||||||||| |||||||||
Sbjct: 11 ggtattggcgcgcctcaatccgaaggcgtggctgatt 47
Score = 56.0 bits (28), Expect = 9e-08
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 65 gcagccatgtttcttggattgagccgcgtcaatatc 100
||||||||||| ||||||||||||||||||||||||
Sbjct: 55 gcagccatgtt-cttggattgagccgcgtcaatatc 89
>RF00643;MIR171_1;EU950482.1/151-254 4577:Zea mays
Length = 104
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 ggtattggcgtgcctcaatccgaaggcatggctgat 36
|||||||||| |||||||||||||||| ||||||||
Sbjct: 11 ggtattggcgcgcctcaatccgaaggcgtggctgat 46
Score = 56.0 bits (28), Expect = 9e-08
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 65 gcagccatgtttcttggattgagccgcgtcaatatc 100
||||||||||| ||||||||||||||||||||||||
Sbjct: 58 gcagccatgtt-cttggattgagccgcgtcaatatc 92
