miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatctgagtgggaatatcgagctgctggtctatggat 60
|||||||||||||||||||||||||||| |||| | || ||||||||| ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 61 ccc 63
|||
Sbjct: 73 ccc 75
Score = 48.1 bits (24), Expect = 4e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 94 ttgtggcttgcatacgccaggagattcattatcctttttctgatccttttttggattgaa 153
|||||||||||||| |||||| ||||||| | | | | ||||||| |||||||||||
Sbjct: 113 ttgtggcttgcatatctcaggagcttcattaccttgtattagatccttgtttggattgaa 172
Query: 154 gggagctc 161
||||||||
Sbjct: 173 gggagctc 180
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 58.0 bits (29), Expect = 4e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 20 agaggatctgagtgggaatatcgagctgctggtctatggatccctcaagtcctatct 76
||||||||| || ||||| || ||||||||| |||||||||||||||| ||||||||
Sbjct: 32 agaggatctaagagggaaaattgagctgctgatctatggatccctcaa-tcctatct 87
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 54.0 bits (27), Expect = 6e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggatctgagtgggaatatcgagctgctggtctatggat 60
|||||||||||||||||||||||| ||| | |||| | || ||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 61 ccc 63
|||
Sbjct: 73 ccc 75
Score = 48.1 bits (24), Expect = 4e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 94 ttgtggcttgcatacgccaggagattcattatcctttttctgatccttttttggattgaa 153
|||||||||||||| |||||| | |||||||| || ||||||| |||||||||||
Sbjct: 113 ttgtggcttgcatatctcaggagctgcattatccaagtttagatccttgtttggattgaa 172
Query: 154 gggagctc 161
||||||||
Sbjct: 173 gggagctc 180
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaggat 26
||||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggat 38
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 136 atccttttttggattgaagggagctc 161
|||||| |||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctc 180
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagagg 24
||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagagg 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 135 gatccttttttggattgaagggagctc 161
||||| |||||||||||||||||||||
Sbjct: 146 gatccctttttggattgaagggagctc 172
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 134 tgatccttttttggattgaagggagctc 161
||||| ||||||||||||||||||||||
Sbjct: 159 tgatcattttttggattgaagggagctc 186
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 135 gatccttttttggattgaagggagctc 161
|||| ||||||||||||||||||||||
Sbjct: 138 gatctttttttggattgaagggagctc 164
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaataga 22
||||||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaataga 22
