miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggttgcctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggttgcctatg 64
Query: 61 atggatggcgtgcacggagccaagc 85
|||||||||||||||||||||||||
Sbjct: 65 atggatggcgtgcacggagccaagc 89
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 95.6 bits (48), Expect = 9e-20
Identities = 80/89 (89%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaacaaacttct----gcgagaggttgcc 56
|||||||||||||||||||||||||| |||||||| ||||||| || |||||||||
Sbjct: 5 gcctggctccctgtatgccactcatccagagcaac-aacttctgggagctagaggttgct 63
Query: 57 tatgatggatggcgtgcacggagccaagc 85
|||||||| ||||||||||||||||||||
Sbjct: 64 tatgatggctggcgtgcacggagccaagc 92
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/85 (85%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggttgcctatg 60
|||||||||||||||||||||||||||||| |||||| || | |||||||||||
Sbjct: 5 gcctggctccctgtatgccactcatctagatcaacaa----ctacctatggttgcctatg 60
Query: 61 atggatggcgtgcacggagccaagc 85
|||| |||||||||||| |||||||
Sbjct: 61 atggttggcgtgcacggtgccaagc 85
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcat 25
|||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactcat 29
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaac 35
||||||||||||||||||||| ||| |||| ||||
Sbjct: 5 gcctggctccctgtatgccacacatgtagaccaac 39
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactc 27
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
