miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AF402959.1/7545-7457 4530:Oryza sativa (rice)
Length = 89
Score = 161 bits (81), Expect = 5e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 133 gtattatcaagagttctctttaagcacttcatacgacaccattatttatagggttgttgt 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtattatcaagagttctctttaagcacttcatacgacaccattatttatagggttgttgt 60
Query: 193 gaagtgtttggaggaactctc 213
|||||||||||||||||||||
Sbjct: 61 gaagtgtttggaggaactctc 81
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 151 bits (76), Expect = 5e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ctaggagttcctttcaagcactttacgacacaccgtattgagagttgtcgtgaagtgttt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7 ctaggagttcctttcaagcactttacgacacactgtattgagagttgtcgtgaagtgttt 66
Query: 61 gggggaactcttagtgtcgc 80
||||||||||||||||||||
Sbjct: 67 gggggaactcttagtgtcgc 86
>RF00451;mir-395;AP008215.1/6552465-6552377 39947:Oryza sativa
Japonica Group
Length = 89
Score = 95.6 bits (48), Expect = 2e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 146 ttctctttaagcacttcatacgacaccattatttatagggttgttgtgaagtgtttggag 205
|||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |
Sbjct: 14 ttctctttaagcacttcatacgacacaattatttcaagggttgttgtgaagtatttggcg 73
Query: 206 gaactctc 213
||||||||
Sbjct: 74 gaactctc 81
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 75.8 bits (38), Expect = 2e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 3 aggagttcctttcaagcactttacgacacaccgtattgagagttgtcgtgaagtgtttgg 62
||||||||| ||||||||||| ||||| ||| | | ||||||||| |||||||||||||
Sbjct: 9 aggagttcccttcaagcacttcacgacgcactatttagagagttgttgtgaagtgtttgg 68
Query: 63 gggaactcttagtgtcgc 80
||||||||| |||||||
Sbjct: 69 gggaactctcggtgtcgc 86
Score = 54.0 bits (27), Expect = 8e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 175 tatttatagggttgttgtgaagtgtttggaggaactctc 213
|||||| || ||||||||||||||||||| |||||||||
Sbjct: 40 tatttagagagttgttgtgaagtgtttgggggaactctc 78
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 67.9 bits (34), Expect = 5e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 1 ctaggagttcctttcaagcactttacgacacaccgtattgagagttgtcgtgaagtgttt 60
|||||||||| | ||||||||| |||| || ||| ||||||| | | |||||||||||
Sbjct: 7 ctaggagttctctgcaagcacttcacgaggcatcgttttgagagcttttgtgaagtgttt 66
Query: 61 gggggaactcttagtgtc 78
||||||||||||||||||
Sbjct: 67 gggggaactcttagtgtc 84
>RF00451;mir-395;AACV01019418.1/13768-13856 39947:Oryza sativa
Japonica Group
Length = 89
Score = 54.0 bits (27), Expect = 8e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 38 ttgagagttgtcgtgaagtgtttgggggaactcttagtgtcgc 80
||||||||||| |||||| ||||||||||| ||| ||||||||
Sbjct: 47 ttgagagttgttgtgaagcgtttgggggaaatctcagtgtcgc 89
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactcttagtgtc 78
|||||||||||||||||||||| |||||
Sbjct: 50 tgaagtgtttgggggaactcttggtgtc 77
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactcttagtgtc 78
|||||||||||||||||||||| |||||
Sbjct: 57 tgaagtgtttgggggaactcttggtgtc 84
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactctt 72
|||||||||||||||||||||||
Sbjct: 61 gtgaagtgtttgggggaactctt 83
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactctt 72
|||||||||||||||||||||||
Sbjct: 73 gtgaagtgtttgggggaactctt 95
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactctt 72
|||||||||||||||||||||||
Sbjct: 55 gtgaagtgtttgggggaactctt 77
>RF00451;mir-395;ABXC01004559.1/91066-91167 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 190 tgtgaagtgtttggaggaactct 212
|||||||||||||||||||||||
Sbjct: 71 tgtgaagtgtttggaggaactct 93
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactctt 72
|||||||||||||||||||||||
Sbjct: 57 gtgaagtgtttgggggaactctt 79
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactctt 72
|||||||||||||||||||||||
Sbjct: 69 gtgaagtgtttgggggaactctt 91
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactctt 72
|||||||||||||||||||||||
Sbjct: 84 gtgaagtgtttgggggaactctt 106
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactctt 72
||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactctt 71
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactctt 72
||||||||||||||||||||||
Sbjct: 91 tgaagtgtttgggggaactctt 112
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactctt 72
||||||||||||||||||||||
Sbjct: 86 tgaagtgtttgggggaactctt 107
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactctt 72
||||||||||||||||||||||
Sbjct: 92 tgaagtgtttgggggaactctt 113
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactctt 72
||||||||||||||||||||||
Sbjct: 87 tgaagtgtttgggggaactctt 108
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactctt 72
||||||||||||||||||||||
Sbjct: 54 tgaagtgtttgggggaactctt 75
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactctt 72
||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactctt 95
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactctt 72
||||||||||||||||||||||
Sbjct: 67 tgaagtgtttgggggaactctt 88
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactctt 72
||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactctt 83
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactct 71
||||||||||||||||||||||
Sbjct: 79 gtgaagtgtttgggggaactct 100
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactct 71
||||||||||||||||||||||
Sbjct: 101 gtgaagtgtttgggggaactct 122
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgaagtgtttgggggaactctt 72
||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactctt 95
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactct 71
||||||||||||||||||||||
Sbjct: 89 gtgaagtgtttgggggaactct 110
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactct 71
||||||||||||||||||||||
Sbjct: 82 gtgaagtgtttgggggaactct 103
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactct 71
||||||||||||||||||||||
Sbjct: 58 gtgaagtgtttgggggaactct 79
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactct 71
||||||||||||||||||||||
Sbjct: 58 gtgaagtgtttgggggaactct 79
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactct 71
||||||||||||||||||||||
Sbjct: 82 gtgaagtgtttgggggaactct 103
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactct 71
||||||||||||||||||||||
Sbjct: 58 gtgaagtgtttgggggaactct 79
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 gtgaagtgtttgggggaactct 71
||||||||||||||||||||||
Sbjct: 82 gtgaagtgtttgggggaactct 103
