miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 159 bits (80), Expect = 7e-39
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcctgcccccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcctgcccccgc 62
Query: 61 cgtgtgctcgctcctctttctgtc 84
|| |||||||||||||||||||||
Sbjct: 63 cgcgtgctcgctcctctttctgtc 86
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcg 27
|||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacggcgcg 29
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcg 25
|||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacggcg 27
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacggc 26
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacggc 26
>RF00073;mir-156;ABXC01006854.1/140253-140338 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcggcggc 32
|||||||||||| |||||| ||||||||||||
Sbjct: 3 gacagaagagagcgagcacccggcgcggcggc 34
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ccccgccgtgtgctcgctcctctttctgtc 84
|||||||| ||||||||| |||||||||||
Sbjct: 55 ccccgccgcgtgctcgcttctctttctgtc 84
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacggc 26
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacggc 26
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacg 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacg 24
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacg 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacg 24
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacg 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacg 24
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacg 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacg 24
