miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 139 bits (70), Expect = 6e-33
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtggtttcttagcatgagtgccatgctgggagctgtgc 60
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 5 cagaagagagtgagcacacacggtggtttcttagcatgagtgccatgttgggagctgtgc 64
Query: 61 gtgctcactctctatctg 78
||||||||||||||||||
Sbjct: 65 gtgctcactctctatctg 82
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 113 bits (57), Expect = 3e-25
Identities = 75/80 (93%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtggtttcttagcatg--agtgccatgctgggagctgt 58
|||||||||||||||||||| |||| |||||||||||| || |||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacacggtgctttcttagcatgcaagagccatgctgggagctgt 64
Query: 59 gcgtgctcactctctatctg 78
||||||||||||||||||||
Sbjct: 65 gcgtgctcactctctatctg 84
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 67.9 bits (34), Expect = 2e-11
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtggtttcttagcatgagtgccatgctgggagctgtgc 60
|||||||||||||||||||||||| ||||| ||||| || ||||||| | |||| |||
Sbjct: 5 cagaagagagtgagcacacatggtctgttctt-gcatgggt-ccatgcttgaagctctgc 62
Query: 61 gtgctcactctctatctg 78
||||||||||||||||||
Sbjct: 63 gtgctcactctctatctg 80
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtggtttctt 32
||||||||||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggtggtttctt 36
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 60.0 bits (30), Expect = 4e-09
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtggtttcttagcatgagtgccatgctgggagctgtgc 60
|||||||||||||||||||| ||| |||||| |||||| ||||||| | | || |||
Sbjct: 5 cagaagagagtgagcacacagggtactttctt-gcatgacatccatgcttgaaactttgc 63
Query: 61 gtgctcactctctatctg 78
||||||||||||||||||
Sbjct: 64 gtgctcactctctatctg 81
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtggtttctt 32
||||||||||||||||||||||||| ||||||
Sbjct: 5 cagaagagagtgagcacacatggtgctttctt 36
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtggtttct 31
||||||||||||||||||||||||| |||||
Sbjct: 5 cagaagagagtgagcacacatggtgttttct 35
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 agaagagagtgagcacacatggtggtttctt 32
|||||||||||||||||||||||| ||||||
Sbjct: 6 agaagagagtgagcacacatggtgttttctt 36
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtgg 26
||||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggtgg 30
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtg 25
|||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggtg 29
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtg 25
|||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggtg 29
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggt 24
||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggt 28
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggt 24
||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggt 24
||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatgg 23
|||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacatgg 27
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacatggtggtttc 30
||||||||||||||||||| |||| |||||
Sbjct: 5 cagaagagagtgagcacacgtggttgtttc 34
>RF00073;mir-156;ABEU01001319.1/101465-101387
145481:Physcomitrella patens subsp. patens
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 3 gaagagagtgagcacacatgg 23
|||||||||||||||||||||
Sbjct: 72 gaagagagtgagcacacatgg 52
