miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 188 bits (95), Expect = 9e-48
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 1 gcaggaaagaggcagagcatggatggagctatcaacaaaataaattgagaatgggagatg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 gcagggaagaggcagagcatggatggagctatcaacaaaataaattgagaatgggagatg 79
Query: 61 tttgttgtggctctactcatgcactgcctcttccctggc 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 80 tttgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 65.9 bits (33), Expect = 9e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
||||||||||| |||||||||||||||||||||||||
Sbjct: 68 tgttgtggctccactcatgcactgcctcttccctggc 104
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 62 ttgttgtggctctactcatgcactgcctcttccctggc 99
||||| ||||||||| ||||||||||||||||||||||
Sbjct: 63 ttgttttggctctacccatgcactgcctcttccctggc 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatggagcta 31
||||||||||||||||||||||
Sbjct: 28 aggcagagcatggatggagcta 49
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 70 gctctactcatgcactgcctcttccctggc 99
||||||| ||||||||||||||||||||||
Sbjct: 78 gctctacccatgcactgcctcttccctggc 107
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 71 ctctactcatgcactgcctcttccctggc 99
|||||| ||||||||||||||||||||||
Sbjct: 79 ctctacccatgcactgcctcttccctggc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||| ||||||||| | ||||||||||||||||||||
Sbjct: 65 tgttttggctctacccctgcactgcctcttccctggc 101
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||||||||| ||||||||||||||||||||||||
Sbjct: 102 tgttgtggctacgctcatgcactgcctcttccctggc 138
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 aagaggcagagcatggatggag 28
||||||||||||||||||||||
Sbjct: 26 aagaggcagagcatggatggag 47
