miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02019539.1/50507-50413 39946:Oryza sativa
Indica Group
Length = 95
Score = 155 bits (78), Expect = 1e-37
Identities = 92/94 (97%), Gaps = 2/94 (2%)
Strand = Plus / Minus
Query: 5 tacctactcccttcattccaaa-taaacca-cctactaagcatgtgacacatcctagtac 62
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 95 tacctactcccttcattccaaaataaaccaacctactaagcatgtgacacatcctagtac 36
Query: 63 caggttggtttattttgggacggagggaatacca 96
||||||||||||||||||||||||||||||||||
Sbjct: 35 caggttggtttattttgggacggagggaatacca 2
>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa
Japonica Group
Length = 97
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 46 gtgacacatcctagtaccaggttggtttattttgggacggaggga 90
||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 52 gtgacacatcctagtacgaggttggcttattttgggacggaggga 8
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 56 ctagtaccaggttggtttattttgggacggagggaatacca 96
||||||| ||||||| ||||||||||||||||||| |||||
Sbjct: 56 ctagtacgaggttggcttattttgggacggagggagtacca 96
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 50 cacatcctagtaccaggttggtttattttgggacggaggga 90
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 48 cacatcctagtacgaggttggtttattttgggacggaggga 8
>RF00906;MIR1122;AP008216.1/15579713-15579809 39947:Oryza sativa
Japonica Group
Length = 97
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 47 tgacacatcctagtaccaggttggtttattttgggacggag 87
|||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 47 tgacacttcctagtacgaggttggtttattttgggacggag 87
>RF00906;MIR1122;AP008212.1/6831401-6831305 39947:Oryza sativa
Japonica Group
Length = 97
Score = 63.9 bits (32), Expect = 4e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 44 atgtgacacatcctagtaccaggttggtttattttgggacggagggaatacc 95
|||||||||||||| |||| ||||| |||||||||||||||||||| ||||
Sbjct: 44 atgtgacacatccttgtacgaggttaatttattttgggacggagggagtacc 95
>RF00906;MIR1122;AAAA02007860.1/10023-9886 39946:Oryza sativa Indica
Group
Length = 138
Score = 61.9 bits (31), Expect = 1e-09
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 44 atgtgacacatcctagtaccaggttggtttattttgggacggagggaatac 94
||||| ||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 86 atgtggcacatcc-agtacgagattggtttattttgggacggagggaatac 135
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 49 acacatcctagtaccaggttggtttattttgggacggaggga 90
|||||| ||||||| |||||||||||||||| ||||||||||
Sbjct: 49 acacatactagtacgaggttggtttattttgagacggaggga 90
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 gttggtttattttgggacggaggga 90
|||||||||||||||||||||||||
Sbjct: 82 gttggtttattttgggacggaggga 106
>RF00906;MIR1122;AACV01013045.1/9312-9408 39947:Oryza sativa
Japonica Group
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 46 gtgacacatcctagtaccaggttggtttattttgggacggaggga 90
||||||||||||||||| |||||| || ||||||||| ||||||
Sbjct: 52 gtgacacatcctagtactaggttgcctttttttgggacagaggga 8
>RF00906;MIR1122;AACV01013835.1/10952-10825 39947:Oryza sativa
Japonica Group
Length = 128
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 58 agtaccaggttggtttattttgggacggagggaatac 94
||||| |||||| | ||||||||||||||||||||||
Sbjct: 40 agtactaggttgctatattttgggacggagggaatac 4
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 ttggtttattttgggacggaggga 90
||||||||||||||||||||||||
Sbjct: 92 ttggtttattttgggacggaggga 115
>RF00906;MIR1122;AP008208.1/33146448-33146543 39947:Oryza sativa
Japonica Group
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 51 acatcctagtaccaggttggtttattttgggacggaggga 90
|||||||||||| || ||| | ||||||||||||||||||
Sbjct: 50 acatcctagtacaagattgctatattttgggacggaggga 89
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa Indica
Group
Length = 136
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 aggttggtttattttgggacggaggga 90
||||| |||||||||||||||||||||
Sbjct: 103 aggtttgtttattttgggacggaggga 129
>RF00906;MIR1122;AAAA02022585.1/6052-5955 39946:Oryza sativa
Indica Group
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 44 atgtgacacatcctagtaccaggttggtttattttgggacggaggga 90
||||| |||||| |||||| |||||| || ||||||||||||||||
Sbjct: 45 atgtgtcacatcgtagtacgaggttgagtttttttgggacggaggga 91
>RF00906;MIR1122;AC104429.2/50540-50620 39947:Oryza sativa
Japonica Group
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 aggttggtttattttgggacggaggga 90
|||||||||| ||||||||||||||||
Sbjct: 48 aggttggttttttttgggacggaggga 74
>RF00906;MIR1122;AAAA02007985.1/61647-61567 39946:Oryza sativa
Indica Group
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 64 aggttggtttattttgggacggaggga 90
|||||||||| ||||||||||||||||
Sbjct: 34 aggttggttttttttgggacggaggga 8
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 aggttggtttattttgggacggaggga 90
||||| |||||||||||||||||||||
Sbjct: 70 aggtttgtttattttgggacggaggga 96
>RF00906;MIR1122;AC229754.2/94242-94126 63629:Oryza minuta
Length = 117
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 aggttggtttattttgggacggaggga 90
||||| |||||||||||||||||||||
Sbjct: 84 aggtttgtttattttgggacggaggga 110
>RF00906;MIR1122;AACV01007974.1/18422-18267 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 8e-05
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 44 atgtgacacatcctagtaccaggttggtttattttgggacggaggga 90
||||| ||||||| ||||| |||||||||| || |||||||||||||
Sbjct: 104 atgtgtcacatcc-agtactaggttggttttttatgggacggaggga 149
>RF00906;MIR1122;AP004256.3/9033-9136 39947:Oryza sativa Japonica
Group
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 ttattttgggacggagggaatac 94
|||||||||||||||||||||||
Sbjct: 79 ttattttgggacggagggaatac 101
>RF00906;MIR1122;AAAA02018626.1/12551-12423 39946:Oryza sativa
Indica Group
Length = 129
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 aggttggtttattttgggacggaggga 90
|||||| ||||||||||||||||||||
Sbjct: 96 aggttgttttattttgggacggaggga 122
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 72 ttattttgggacggagggaata 93
||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggaata 5
>RF00906;MIR1122;AAAA02031077.1/11612-11490 39946:Oryza sativa
Indica Group
Length = 123
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 57 tagtaccaggttggtttattttgggacggaggga 90
|||||| || |||||||||||||||||| |||||
Sbjct: 83 tagtacaagattggtttattttgggacgaaggga 116
>RF00906;MIR1122;AAAA02031697.1/13340-13228 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 58 agtaccaggttggtttattttgggacggagggaatacc 95
||||| |||||| | |||||||||||||||||| ||||
Sbjct: 74 agtactaggttgctatattttgggacggagggagtacc 111
>RF00906;MIR1122;AACV01022727.1/29353-29231 39947:Oryza sativa
Japonica Group
Length = 123
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 57 tagtaccaggttggtttattttgggacggaggga 90
|||||| || |||||||||||||||||| |||||
Sbjct: 83 tagtacaagattggtttattttgggacgaaggga 116
>RF00906;MIR1122;AAAA02007218.1/59330-59175 39946:Oryza sativa
Indica Group
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 tattttgggacggagggaatac 94
||||||||||||||||||||||
Sbjct: 132 tattttgggacggagggaatac 153
>RF00906;MIR1122;AACV01019763.1/6220-6087 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 ttattttgggacggagggaata 93
||||||||||||||||||||||
Sbjct: 109 ttattttgggacggagggaata 130
>RF00906;MIR1122;AP003508.3/31246-31125 39947:Oryza sativa
Japonica Group
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 65 ggttggtttattttgggacggaggga 90
|||||||||||||| |||||||||||
Sbjct: 33 ggttggtttattttaggacggaggga 8
