miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 248 bits (125), Expect = 2e-65
Identities = 169/181 (93%), Gaps = 2/181 (1%)
Strand = Plus / Plus
Query: 1 agagctccttaaagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgg 60
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 12 agagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatgg 71
Query: 61 atcccataagccctaa-ccttaaacatagaaaaaggattttggttatatggcttgcatat 119
|||||||||||||||| |||| | | ||||||||||| |||||||||| ||||||||
Sbjct: 72 atcccataagccctaatccttgtaaagtaaaaaaggattt-ggttatatggattgcatat 130
Query: 120 ctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctc 190
Query: 180 t 180
|
Sbjct: 191 t 191
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 95.6 bits (48), Expect = 2e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 agagctccttaaagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgg 60
|||||||||| |||||||| ||| |||||||||||| ||| ||||||||||||||||||
Sbjct: 12 agagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatgg 71
Query: 61 atcccataagcc 72
||||||||||||
Sbjct: 72 atcccataagcc 83
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 ggcttgcatatctcaggagcttta 132
||||||||||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagcttta 124
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 ggcttgcatatctcaggagcttta 132
||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 108 tggcttgcatatctcaggagctt 130
|||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagctt 138
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 tggcttgcatatctcaggagct 129
||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagct 137
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
