miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 119 bits (60), Expect = 5e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggat 60
||||||||||||||||||||||||| ||||||||||||| ||||||||| || | |||||
Sbjct: 4 tgcctggctccctgtatgccatttggagagctcatcgaaacatcaatgatctctttggat 63
Query: 61 ggcgtatgaggagccaagca 80
||||||||||||||||||||
Sbjct: 64 ggcgtatgaggagccaagca 83
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 103 bits (52), Expect = 3e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggat 60
|||||||||||||||||||||| | | ||||||| ||| |||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatatatgaagctcattgaaaaatcaatgacctttgtggat 63
Query: 61 ggcgtatgaggagccaagca 80
||||||||||||||||||||
Sbjct: 64 ggcgtatgaggagccaagca 83
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 79.8 bits (40), Expect = 5e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggat 60
||||||||||||||||||||||||| ||||| || || |||| ||| |||| ||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggat 63
Query: 61 ggcgtatgaggagcca 76
||||||||||||||||
Sbjct: 64 ggcgtatgaggagcca 79
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggat 60
||||||||||||||||||||||||| ||||| || || |||||| || ||| ||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccg-agcatcgctggcctccgtggat 62
Query: 61 ggcgtatgaggagcca 76
||||||||||||||||
Sbjct: 63 ggcgtatgaggagcca 78
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggat 60
|||||||||||||||||||||| || |||| |||||| | ||| ||||||| ||||||
Sbjct: 4 tgcctggctccctgtatgccatatgctgagcccatcga-gtatcgatgacctccgtggat 62
Query: 61 ggcgtatgaggagcca 76
||||||||||||||||
Sbjct: 63 ggcgtatgaggagcca 78
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggat 60
||||||||||||||||||||||||| ||||| || || | | || ||| ||| ||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtggat 63
Query: 61 ggcgtatgaggagcca 76
||||||||||||||||
Sbjct: 64 ggcgtatgaggagcca 79
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgtagag 30
||||||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgtagag 33
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgt 26
||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgt 29
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgtagagctca 34
||||||||||||||||||||||||| | ||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcaaagctca 37
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 atggcgtatgaggagccaagca 80
||||||||||||||||||||||
Sbjct: 65 atggcgtatgaggagccaagca 86
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttg 25
|||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttg 28
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgtagagctcatc 36
|||||||||||||| |||||||||| | ||||||||
Sbjct: 4 tgcctggctccctgcatgccatttgcatagctcatc 39
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
