miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AY551232.1/7-113 4530:Oryza sativa (rice)
Length = 107
Score = 188 bits (95), Expect = 9e-48
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 gggattgttgtctggttcaaggtctccacattgtgcaaaatgttcattcatggaggcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gggattgttgtctggttcaaggtctccacattgtgcaaaatgttcattcatggaggcaca 66
Query: 61 ggatgcttggtgatctcggaccaggcttcaatccc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 67 ggatgcttggtgatctcggaccaggcttcaatccc 101
>RF00075;mir-166;BT056134.1/436-541 4577:Zea mays
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 gatctcggaccaggcttcaatccc 95
||||||||||||||||||||||||
Sbjct: 77 gatctcggaccaggcttcaatccc 100
>RF00075;mir-166;ABXC01001421.1/165860-165981 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 gatctcggaccaggcttcaatccc 95
||||||||||||||||||||||||
Sbjct: 93 gatctcggaccaggcttcaatccc 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 ttgttgtctggttcaaggtctccaca 30
|||||||||||||||||||| |||||
Sbjct: 11 ttgttgtctggttcaaggtcgccaca 36
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 gtgatctcggaccaggcttcaatccc 95
||||||||||||||||||||| ||||
Sbjct: 94 gtgatctcggaccaggcttcattccc 119
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus
trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 gtgatctcggaccaggcttcaatccc 95
||||||||||||||||||||| ||||
Sbjct: 63 gtgatctcggaccaggcttcattccc 88
