miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctattgtgctcttctgaatgatgcagtgccatgatcagtgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agccaaggatgacttgcctattgtgctcttctgaatgatgcagtgccatgatcagtgtgg 65
Query: 61 cctggctggttcagatgagccgagataggcagtctccttggct 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cctggctggttcagatgagccgagataggcagtctccttggct 22
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctattgtgctcttctgaatgatgcagtgccatgatcagtgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgcctattgtgctcttctgaatgatgcagtgccatgatcagtgtgg 74
Query: 61 cctggctggttcagatgagccgagataggcagtctccttggct 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 cctggctggttcagatgagccgagataggcagtctccttggct 117
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctatt 22
||||||||||||||||||||||
Sbjct: 120 agccaaggatgacttgcctatt 99
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctatt 22
||||||||||||||||||||||
Sbjct: 131 agccaaggatgacttgcctatt 110
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctatt 22
||||||||||||||||||||||
Sbjct: 17 agccaaggatgacttgcctatt 38
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctatt 22
||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgcctatt 35
