miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 147 bits (74), Expect = 2e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtggtttcttagcatgagtgccatgctgggagctgt 60
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 3 gacagaagagagtgagcacacacggtggtttcttagcatgagtgccatgttgggagctgt 62
Query: 61 gcgtgctcactctctatctgtc 82
||||||||||||||||||||||
Sbjct: 63 gcgtgctcactctctatctgtc 84
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 121 bits (61), Expect = 1e-27
Identities = 79/84 (94%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtggtttcttagcatg--agtgccatgctgggagct 58
|||||||||||||||||||||| |||| |||||||||||| || |||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacacggtgctttcttagcatgcaagagccatgctgggagct 62
Query: 59 gtgcgtgctcactctctatctgtc 82
||||||||||||||||||||||||
Sbjct: 63 gtgcgtgctcactctctatctgtc 86
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 75.8 bits (38), Expect = 8e-14
Identities = 73/82 (89%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtggtttcttagcatgagtgccatgctgggagctgt 60
|||||||||||||||||||||||||| ||||| ||||| || ||||||| | |||| |
Sbjct: 3 gacagaagagagtgagcacacatggtctgttctt-gcatgggt-ccatgcttgaagctct 60
Query: 61 gcgtgctcactctctatctgtc 82
||||||||||||||||||||||
Sbjct: 61 gcgtgctcactctctatctgtc 82
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtggtttctt 34
||||||||||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggtggtttctt 36
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtggtttcttagcatgagtgccatgctgggagctgt 60
|||||||||||||||||||||| ||| |||||| |||||| ||||||| | | || |
Sbjct: 3 gacagaagagagtgagcacacagggtactttctt-gcatgacatccatgcttgaaacttt 61
Query: 61 gcgtgctcactctctatctgtc 82
||||||||||||||||||||||
Sbjct: 62 gcgtgctcactctctatctgtc 83
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtggtttctt 34
||||||||||||||||||||||||||| ||||||
Sbjct: 3 gacagaagagagtgagcacacatggtgctttctt 36
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtggtttct 33
||||||||||||||||||||||||||| |||||
Sbjct: 3 gacagaagagagtgagcacacatggtgttttct 35
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtgg 28
||||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggtgg 30
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 4 agaagagagtgagcacacatggtggtttctt 34
|||||||||||||||||||||||| ||||||
Sbjct: 6 agaagagagtgagcacacatggtgttttctt 36
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtg 27
|||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtg 27
|||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggt 26
||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggt 26
||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggt 26
||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatgg 25
|||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatgg 27
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggtggtttc 32
||||||||||||||||||||| |||| |||||
Sbjct: 3 gacagaagagagtgagcacacgtggttgtttc 34
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacatggt 26
|||||||||||||||||||| |||||
Sbjct: 3 gacagaagagagtgagcacatatggt 28
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacaca 22
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
