miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 119 bits (60), Expect = 7e-27
Identities = 86/94 (91%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 4 aagatctctattggcagaaaaccattacttagatctttgcatctctttctgcattgattt 63
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 17 aagatctctattggcaggaaaccattacttagatctttgcatctctttatgcattgcttt 76
Query: 64 ---gtagtgagttctctgccaaaggagatttgcc 94
||||||||| ||||||||||||||||||||
Sbjct: 77 taattagtgagttatctgccaaaggagatttgcc 110
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 61 tttgtagtgagttctctgccaaaggagatttgcc 94
||||| ||||| ||||||||||||||||||||||
Sbjct: 72 tttgtggtgagctctctgccaaaggagatttgcc 105
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 ttctctgccaaaggagatttgcc 94
|||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgcc 87
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 tctctgccaaaggagatttgcc 94
||||||||||||||||||||||
Sbjct: 83 tctctgccaaaggagatttgcc 104
