miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 121 bits (61), Expect = 2e-27
Identities = 87/95 (91%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 5 aagatctctattggcagaaaaccattacttagatctttgcatctctttctgcattgattt 64
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 17 aagatctctattggcaggaaaccattacttagatctttgcatctctttatgcattgcttt 76
Query: 65 ---gtagtgagttctctgccaaaggagatttgccc 96
||||||||| |||||||||||||||||||||
Sbjct: 77 taattagtgagttatctgccaaaggagatttgccc 111
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 62 tttgtagtgagttctctgccaaaggagatttgccc 96
||||| ||||| |||||||||||||||||||||||
Sbjct: 72 tttgtggtgagctctctgccaaaggagatttgccc 106
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 ttctctgccaaaggagatttgccc 96
||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccc 88
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 74 tctctgccaaaggagatttgccc 96
|||||||||||||||||||||||
Sbjct: 83 tctctgccaaaggagatttgccc 105
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 67 agtgagttctctgccaaaggagatttgccc 96
|||| |||| ||||||||||||||||||||
Sbjct: 76 agtgtgttccctgccaaaggagatttgccc 105
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 ctctgccaaaggagatttgccc 96
||||||||||||||||||||||
Sbjct: 83 ctctgccaaaggagatttgccc 104
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 ctctgccaaaggagatttgccc 96
||||||||||||||||||||||
Sbjct: 68 ctctgccaaaggagatttgccc 89
