miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02005726.1/12385-12489 3988:Ricinus communis
          (castor bean)
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 tttgattgagccgcgtcaatat 78
          ||||||||||||||||||||||
Sbjct: 71 tttgattgagccgcgtcaatat 92

>RF00643;MIR171_1;AC157488.1/72896-73001 3880:Medicago truncatula
          (barrel medic)
          Length = 106

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 tttgattgagccgcgtcaatat 78
          ||||||||||||||||||||||
Sbjct: 72 tttgattgagccgcgtcaatat 93

>RF00643;MIR171_1;BABK01034163.1/917-1020 34305:Lotus japonicus
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 tttgattgagccgcgtcaatat 78
          ||||||||||||||||||||||
Sbjct: 70 tttgattgagccgcgtcaatat 91

>RF00643;MIR171_1;CAAP02000614.1/91102-91000 29760:Vitis vinifera
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 tttgattgagccgcgtcaatat 78
          ||||||||||||||||||||||
Sbjct: 69 tttgattgagccgcgtcaatat 90



 Score = 42.1 bits (21), Expect = 0.001
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                               
Query: 1  tattggcgtgcctcaatctaattacatggttaaatga 37
          ||||||||||||||||| |||  ||||||||| ||||
Sbjct: 13 tattggcgtgcctcaatttaaagacatggttagatga 49