miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 109 bits (55), Expect = 8e-24
Identities = 86/94 (91%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 21 actgcattacttgcaagaaaggcacaaaatc-attagatgat--tacttgtggctttctt 77
||||||||||||||||||||| ||||||||| ||| | ||| ||||||||||||||||
Sbjct: 63 actgcattacttgcaagaaagtcacaaaatccattgcaagatcatacttgtggctttctt 122
Query: 78 gcaagttgtgcagttgctgcctcaagcttgctgc 111
|||||||||||||||| |||||||||||||||||
Sbjct: 123 gcaagttgtgcagttgttgcctcaagcttgctgc 156
Score = 54.0 bits (27), Expect = 4e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 1 gcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 47
||||||||||| || || |||||||||||||||||||||| |||||
Sbjct: 12 gcaccaagcattagtcaggaactgcattacttgcaagaaagtcacaa 58
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 5 caagcatgaggcaacaactgcattacttgcaagaaaggcacaa 47
||||| |||||||||||||||| ||||||||||||| |||||
Sbjct: 152 caagcttgaggcaacaactgcacaacttgcaagaaagccacaa 110
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 91.7 bits (46), Expect = 2e-18
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 62 tacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgc 111
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 179 tacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgc 228
Score = 69.9 bits (35), Expect = 7e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 1 gcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 47
||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 2 gcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 48
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 5 caagcatgaggcaacaactgcattacttgcaagaaaggcacaa 47
||||| |||||||||||||||| ||||||||||||| |||||
Sbjct: 224 caagcttgaggcaacaactgcacaacttgcaagaaagccacaa 182
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 64 cttgtggctttcttgcaagttgtgcagttgctgcctcaagcttg 107
|||||| ||||||||||||| ||||||| |||||||| |||||
Sbjct: 49 cttgtgactttcttgcaagtaatgcagttcctgcctcatgcttg 6
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 91.7 bits (46), Expect = 2e-18
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 62 tacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgc 111
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 113 tacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgc 162
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 gcaccaagcatgaggcaacaactgcattacttg 33
|||||||||||||||||||||||||| ||||||
Sbjct: 12 gcaccaagcatgaggcaacaactgcagtacttg 44
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 5 caagcatgaggcaacaactgcattacttgcaagaaaggcacaa 47
||||| ||||||| |||||||| ||||||||||||| |||||
Sbjct: 158 caagcttgaggcagcaactgcacgacttgcaagaaagccacaa 116
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 71 ctttcttgcaagttgtgcagttgctgcctcaagcttgctgc 111
||||||||||||||||||||||| |||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgc 154
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 gcaccaagcatgaggcaacaactgcattacttgcaag 37
||||||||||||||| ||||||||||||||||||||
Sbjct: 12 gcaccaagcatgaggttacaactgcattacttgcaag 48
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 5 caagcatgaggcaacaactgcattacttgcaagaaag 41
||||| |||||||||||||||| |||||||||||||
Sbjct: 150 caagcttgaggcaacaactgcacaacttgcaagaaag 114
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 69.9 bits (35), Expect = 7e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 1 gcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 47
||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 12 gcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 58
Score = 54.0 bits (27), Expect = 4e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 61 ttacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttg 107
||||||||| ||||||||||||| ||||||| |||||||| |||||
Sbjct: 62 ttacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttg 16
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 69.9 bits (35), Expect = 7e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 73 ttcttgcaagttgtgcagttgctgcctcaagcttgctgc 111
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgc 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 5 caagcatgaggcaacaactgcattacttgcaagaa 39
||||| ||||||| ||||||||| |||||||||||
Sbjct: 114 caagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 72 tttcttgcaagttgtgcagttgctgcctcaagcttgctgc 111
|||||||||||||||||||||| || ||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgc 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 72 tttcttgcaagttgtgcagttgctgcctcaagct 105
||||||||||| | ||||||||||||||| ||||
Sbjct: 51 tttcttgcaagatatgcagttgctgcctctagct 18
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 72 tttcttgcaagttgtgcagttgctgcctcaagcttgctgc 111
|||||||||||||||||||||| || ||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgc 119
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 72 tttcttgcaagttgtgcagttgctgcctcaagcttgctgc 111
||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgc 12
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 78 gcaagttgtgcagttgctgcctcaagcttgctgc 111
||||||| ||||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgc 123
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 74 tcttgcaagttgtgcagttgctgcctcaagcttgctgc 111
||||||||||| ||||||||||||||||||||| ||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgc 118
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 72 tttcttgcaagttgtgcagttgctgcctcaagcttgctgc 111
||||||||||| |||||||||| || ||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgc 117
