miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gcctggctccctgcatgccactcatgtagcccaatccatggtgtgtttggatgctgtggg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgctgtggg 64
Query: 61 tggcgtgcaaggagccaagc 80
||||||||||||||||||||
Sbjct: 65 tggcgtgcaaggagccaagc 84
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 95.6 bits (48), Expect = 8e-20
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgcatgccactcatgtagcccaatccatggtgtgtttggatgctgtggg 60
||||||||||||| ||||||| ||||||||| || || ||| ||| ||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacacatgtagcc-aacccgtggcgtgattggatgctgtggg 63
Query: 61 tggcgtgcaaggagccaagc 80
||||||||||||||||||||
Sbjct: 64 tggcgtgcaaggagccaagc 83
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 gcctggctccctgcatgccactcatgtagcccaatcc--atggtgtgtttggatgctgtg 58
||||||||||||| ||||||| |||||||||||| || ||| | | ||| |||||||
Sbjct: 5 gcctggctccctgtatgccacacatgtagcccaacccatatgctaaggttgcctgctgtg 64
Query: 59 ggtggcgtgcaaggagccaagc 80
|||||||||||||| |||||||
Sbjct: 65 ggtggcgtgcaaggggccaagc 86
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 56.0 bits (28), Expect = 7e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1 gcctggctccctgcatgccactcatgtagcccaatccatggtgt 44
||||||||||||| ||||||| ||||||| |||| |||||||||
Sbjct: 5 gcctggctccctgtatgccacacatgtagaccaacccatggtgt 48
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 tgctgtgggtggcgtgcaaggagccaagc 80
||||||||||||||||||||| |||||||
Sbjct: 60 tgctgtgggtggcgtgcaaggggccaagc 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gcctggctccctgcatgccactcatgtagc 30
||||||||||||| ||||||| ||||||||
Sbjct: 5 gcctggctccctgtatgccacacatgtagc 34
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 67/80 (83%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgcatgccactcatgtagcccaatccatggtgtgtttggatgctgtggg 60
||||||||||||| ||||||| |||| | |||||| ||| ||| |||| |||||||
Sbjct: 5 gcctggctccctgtatgccacacatggacaccaatctttgg-gtgattggtgactgtggg 63
Query: 61 tggcgtgcaaggagccaagc 80
||| ||||||||||||||||
Sbjct: 64 tggtgtgcaaggagccaagc 83
