miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
           cress)
          Length = 204

 Score =  226 bits (114), Expect = 8e-59
 Identities = 162/177 (91%), Gaps = 2/177 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatggata 63
           |||||||| |||||||||  ||||| ||| ||||||||||||||||||||||||||||| 
Sbjct: 15  gctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatggatc 74

                                                                       
Query: 64  ccataagccctaatccttgtattg--aaaaaggacttggtaatatggcttgcatatctca 121
           |||||||||||||||||||||  |  |||||||| ||||| |||||| ||||||||||||
Sbjct: 75  ccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcatatctca 134

                                                                    
Query: 122 ggagctttaacttaccctttaattgcttttactcttctttggattgaagggagctct 178
           ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 135 ggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctct 191




>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
           (thale cress)
          Length = 208

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 62/67 (92%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                       
Query: 113 catatctcaggagctttaacttaccc-tttaattgcttttactcttctttggattgaagg 171
           ||||||||||||||||| |||||||| |||||| ||||  ||||||||||||||||||||
Sbjct: 130 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 188

                  
Query: 172 gagctct 178
           |||||||
Sbjct: 189 gagctct 195



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                      
Query: 4  gctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatggata 63
          |||||||  |||||||  ||| ||||||| |||| ||| |||||||||||||||||||| 
Sbjct: 15 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 74

                   
Query: 64 ccataagcc 72
          |||||||||
Sbjct: 75 ccataagcc 83




>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
          Length = 165

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 107 ggcttgcatatctcaggagcttta 130
           ||||||||||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagcttta 124




>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
          Length = 186

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 107 ggcttgcatatctcaggagcttta 130
           ||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132




>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
           (castor bean)
          Length = 194

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 106 tggcttgcatatctcaggagctt 128
           |||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagctt 138




>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
          Length = 194

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 106 tggcttgcatatctcaggagct 127
           ||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagct 137




>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
          Length = 233

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220




>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
           (sorghum)
          Length = 244

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231




>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
          Length = 187

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174




>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
           Japonica Group
          Length = 274

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261