miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01010622.1/23023-23178 39947:Oryza sativa
Japonica Group
Length = 156
Score = 52.0 bits (26), Expect = 9e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1 gtgacatattctagtacaatgaatatgtacagagatatatctagatttgtagtactag 58
|||||||||||||||| ||||||| || | |||||||| || ||||| ||||| ||||
Sbjct: 45 gtgacatattctagtataatgaatctggatagagatatgtccagattcgtagtcctag 102
>RF00906;MIR1122;AACV01007974.1/18422-18267 39947:Oryza sativa
Japonica Group
Length = 156
Score = 52.0 bits (26), Expect = 9e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1 gtgacatattctagtacaatgaatatgtacagagatatatctagatttgtagtactag 58
|||||| |||||||||||| |||| || |||||| ||| || ||||| ||||||||||
Sbjct: 45 gtgacacattctagtacaacgaatctggacagaggtatgtccagattcgtagtactag 102
>RF00906;MIR1122;AP003725.3/107083-106927 39947:Oryza sativa
Japonica Group
Length = 157
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 gtgacatattctagtacaatgaatatgtacaga 33
||||||||||||||||| ||||||||| |||||
Sbjct: 45 gtgacatattctagtacgatgaatatggacaga 77
>RF00906;MIR1122;AAAA02032462.1/25561-25405 39946:Oryza sativa
Indica Group
Length = 157
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gtgacatattctagtacaatgaatatgtacag 32
||||||||| ||||||||||||||||| ||||
Sbjct: 45 gtgacatatcctagtacaatgaatatggacag 76
>RF00906;MIR1122;AAAA02003707.1/8900-8747 39946:Oryza sativa Indica
Group
Length = 154
Score = 44.1 bits (22), Expect = 2e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 1 gtgacatattctagtacaatgaatatgtacagagatatatctagatttgtagtactag 58
||||||||||||||||| |||||| || | | | |||| || ||||| ||||||||||
Sbjct: 44 gtgacatattctagtacgatgaatttggatatatatatgtccagattcgtagtactag 101
>RF00906;MIR1122;AACV01016857.1/872-736 39947:Oryza sativa
Japonica Group
Length = 137
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gtgacatattctagtacaatga 22
||||||||||||||||||||||
Sbjct: 45 gtgacatattctagtacaatga 66
>RF00906;MIR1122;AP004736.2/17089-17220 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 agatttgtagtactagaatacatcac 68
|||||||| |||||||||||||||||
Sbjct: 70 agatttgttgtactagaatacatcac 45
>RF00906;MIR1122;ABRL01000294.1/23842-24000 65489:Oryza barthii
Length = 159
Score = 42.1 bits (21), Expect = 8e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 gtgacatattctagtacaatgaatatgtacaga 33
||||||||||||||||| |||||| || |||||
Sbjct: 45 gtgacatattctagtacgatgaatctggacaga 77
>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
Indica Group
Length = 138
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 40 tctagatttgtagtactagaatacatcac 68
||||||||||| |||||||||| ||||||
Sbjct: 68 tctagatttgttgtactagaatgcatcac 40
