miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 56.0 bits (28), Expect = 6e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 agggcttctctttgttggcaggaaatga-catgatcatctcatgaaatatcttgccaaag 59
||||||||||||| |||||||||||| | ||||| ||| ||| | | |||||||||||
Sbjct: 12 agggcttctctttcttggcaggaaattatcatgaccattccatcatgtgtcttgccaaag 71
Query: 60 gagagttgccct 71
||||||||||||
Sbjct: 72 gagagttgccct 83
>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tcttgccaaaggagagttgccct 71
|||||||||||||||||||||||
Sbjct: 60 tcttgccaaaggagagttgccct 82
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 cttgccaaaggagagttgccct 71
||||||||||||||||||||||
Sbjct: 83 cttgccaaaggagagttgccct 104
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 cttgccaaaggagagttgccct 71
||||||||||||||||||||||
Sbjct: 71 cttgccaaaggagagttgccct 92
