miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 137 bits (69), Expect = 3e-32
Identities = 85/89 (95%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 16 actgcattacttgcaagaaagtcacaaaatcaattgcagga-catacttgtggttttctt 74
||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||
Sbjct: 63 actgcattacttgcaagaaagtcacaaaatccattgcaagatcatacttgtggctttctt 122
Query: 75 gcaagttgtgcagttgttgcctcaagctt 103
|||||||||||||||||||||||||||||
Sbjct: 123 gcaagttgtgcagttgttgcctcaagctt 151
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 1 aagcatgaggcaggaactgcattacttgcaagaaagtcacaa 42
|||||| || ||||||||||||||||||||||||||||||||
Sbjct: 17 aagcattagtcaggaactgcattacttgcaagaaagtcacaa 58
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 85.7 bits (43), Expect = 1e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 57 catacttgtggttttcttgcaagttgtgcagttgttgcctcaagctt 103
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 177 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagctt 223
Score = 83.8 bits (42), Expect = 4e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 1 aagcatgaggcaggaactgcattacttgcaagaaagtcacaa 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aagcatgaggcaggaactgcattacttgcaagaaagtcacaa 48
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 83.8 bits (42), Expect = 4e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 1 aagcatgaggcaggaactgcattacttgcaagaaagtcacaa 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 aagcatgaggcaggaactgcattacttgcaagaaagtcacaa 58
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 69.9 bits (35), Expect = 6e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 57 catacttgtggttttcttgcaagttgtgcagttgttgcctcaagctt 103
||||||||||| |||||||||||| ||||||||| ||||||||||||
Sbjct: 111 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagctt 157
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 1 aagcatgaggcaggaactgcattacttgcaagaaagtcacaa 42
|||| |||||||| ||||||| ||||||||||||| |||||
Sbjct: 157 aagcttgaggcagcaactgcacgacttgcaagaaagccacaa 116
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 69.9 bits (35), Expect = 6e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 69 tttcttgcaagttgtgcagttgttgcctcaagctt 103
|||||||||||||||||||||||||||||||||||
Sbjct: 115 tttcttgcaagttgtgcagttgttgcctcaagctt 149
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 68 ttttcttgcaagttgtgcagttgttgcctcaagctt 103
|||||||||||||||||||||||||| |||||||||
Sbjct: 77 ttttcttgcaagttgtgcagttgttgtctcaagctt 112
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 68 ttttcttgcaagttgtgcagttgttgcctcaagctt 103
|||||||||||||||||||||||||| |||||||||
Sbjct: 79 ttttcttgcaagttgtgcagttgttgtctcaagctt 114
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 68 ttttcttgcaagttgtgcagttgttgcctcaagctt 103
|||||||||||| ||||||||||||| |||||||||
Sbjct: 77 ttttcttgcaagctgtgcagttgttgtctcaagctt 112
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 70 ttcttgcaagttgtgcagttgttgcctcaagctt 103
|||||||||||| |||||||| ||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagctt 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1 aagcatgaggcaggaactgcattacttgcaagaa 34
|||| |||||||| |||||||| |||||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 71 tcttgcaagttgtgcagttgttgcctcaagctt 103
||||||||||| |||||||| ||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagctt 113
