miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus trichocarpa
Length = 210
Score = 246 bits (124), Expect = 9e-65
Identities = 173/189 (91%), Gaps = 4/189 (2%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtagcctccctcggattcaagaacacgagcatttatgcag 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 13 tagccaaggatgacttgcctgtagcctccctcggattcatgaacacgagcatttatgtgg 72
Query: 61 tgctcaaaagaaaaggagagaatgatcccagcttgctgcgcgctacaaggtcaatccatg 120
||||||||||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct: 73 tgctcaaaagaaaaggagagaatgatcccagctggcagcg----acaaggtcaatccatt 128
Query: 121 gaagcagcgagaagaaggtggtttatagctagaatcctcatgaggttcacagcaagtgtc 180
|||| ||||||||| ||||| |||||||||||||||| || ||||||| |||||||||||
Sbjct: 129 gaagtagcgagaagcaggtgatttatagctagaatccacaagaggttcccagcaagtgtc 188
Query: 181 cttggctaa 189
|||||||||
Sbjct: 189 cttggctaa 197
>RF00865;MIR169_5;EU968670.1/235-103 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtagcctcc 29
|||||||||||||||||||||| ||||||
Sbjct: 113 tagccaaggatgacttgcctgtggcctcc 85
>RF00865;MIR169_5;ABXC01001464.1/179344-179197 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtagcctcc 29
|||||||||||||||||||||| ||||||
Sbjct: 128 tagccaaggatgacttgcctgtggcctcc 100
>RF00645;MIR169_2;EU968670.1/110-229 4577:Zea mays
Length = 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtagcctcc 29
|||||||||||||||||||||| ||||||
Sbjct: 14 tagccaaggatgacttgcctgtggcctcc 42
>RF00645;MIR169_2;ABXC01001464.1/179202-179340 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtagcctcc 29
|||||||||||||||||||||| ||||||
Sbjct: 16 tagccaaggatgacttgcctgtggcctcc 44
>RF00865;MIR169_5;ABXC01001464.1/182182-182031 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtagcctc 28
|||||||||||||||||||||| |||||
Sbjct: 133 tagccaaggatgacttgcctgtggcctc 106
>RF00865;MIR169_5;AACV01020369.1/3584-3757 39947:Oryza sativa
Japonica Group
Length = 174
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtagcctc 28
|||||||||||||||||||||| |||||
Sbjct: 155 tagccaaggatgacttgcctgtggcctc 128
>RF00645;MIR169_2;ABXC01001464.1/182038-182176 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtagcctc 28
|||||||||||||||||||||| |||||
Sbjct: 13 tagccaaggatgacttgcctgtggcctc 40
>RF00645;MIR169_2;AY551243.1/20-180 4530:Oryza sativa (rice)
Length = 161
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtagcctc 28
|||||||||||||||||||||| |||||
Sbjct: 13 tagccaaggatgacttgcctgtggcctc 40
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtagcctccct 31
|||||||||||||||||||||| |||||||
Sbjct: 108 tagccaaggatgacttgcctgtgtcctccct 78
>RF00865;MIR169_5;AACV01018924.1/12529-12684 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgta 23
|||||||||||||||||||||||
Sbjct: 137 tagccaaggatgacttgcctgta 115
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtagcctccct 31
|||||||||||||||||||||| |||||||
Sbjct: 10 tagccaaggatgacttgcctgtgtcctccct 40
>RF00645;MIR169_2;AP008214.1/26806653-26806795 39947:Oryza sativa
Japonica Group
Length = 143
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgta 23
|||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgta 35
>RF00865;MIR169_5;AB016889.1/44658-44824 3702:Arabidopsis thaliana
(thale cress)
Length = 167
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 148 tagccaaggatgacttgcctgt 127
>RF00865;MIR169_5;AASG02001447.1/39455-39304 3988:Ricinus communis
(castor bean)
Length = 152
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtagcc 26
||||||||||||||||||||| ||||
Sbjct: 132 tagccaaggatgacttgcctgcagcc 107
>RF00865;MIR169_5;BT061088.1/1092-1244 4577:Zea mays
Length = 153
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 134 tagccaaggatgacttgcctgt 113
>RF00865;MIR169_5;AP004464.3/58814-58687 39947:Oryza sativa Japonica
Group
Length = 128
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 108 tagccaaggatgacttgcctgt 87
>RF00865;MIR169_5;AK240880.1/275-135 39947:Oryza sativa Japonica
Group
Length = 141
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 121 tagccaaggatgacttgcctgt 100
>RF00865;MIR169_5;AC096688.4/11614-11485 39947:Oryza sativa Japonica
Group
Length = 130
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtagcc 26
||||||||||||| ||||||||||||
Sbjct: 110 tagccaaggatgatttgcctgtagcc 85
>RF00865;MIR169_5;AY551246.1/188-45 4530:Oryza sativa (rice)
Length = 144
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 124 tagccaaggatgacttgcctgt 103
>RF00645;MIR169_2;AB016889.1/44816-44664 3702:Arabidopsis thaliana
(thale cress)
Length = 153
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgcctgt 33
>RF00645;MIR169_2;AASG02001447.1/39312-39449 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtagcc 26
||||||||||||||||||||| ||||
Sbjct: 13 tagccaaggatgacttgcctgcagcc 38
>RF00645;MIR169_2;ABXC01005012.1/1911-1797 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 10 tagccaaggatgacttgcctgt 31
>RF00645;MIR169_2;AC137595.2/89199-89329 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgt 35
>RF00645;MIR169_2;AP004464.3/58694-58808 39947:Oryza sativa
Japonica Group
Length = 115
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgt 35
>RF00645;MIR169_2;CT835986.1/139-261 39946:Oryza sativa Indica
Group
Length = 123
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctgt 30
