miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
          Length = 119

 Score =  157 bits (79), Expect = 3e-38
 Identities = 82/83 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 18  gacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctac 77

                                  
Query: 61  ccatgcactgcctcttccctggc 83
           |||||||||||||||||||||||
Sbjct: 78  ccatgcactgcctcttccctggc 100




>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
           (castor bean)
          Length = 120

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 74/81 (91%), Gaps = 3/81 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gggaacaggcagagcatggatggagctactaacagaagtaca--tgttttggctctaccc 62
           |||||||||||| |||||||||| |||||||||||||  |||  ||||||||||||||||
Sbjct: 22  gggaacaggcagtgcatggatggggctactaacagaa-aacatctgttttggctctaccc 80

                                
Query: 63  atgcactgcctcttccctggc 83
            ||||||||||||||||||||
Sbjct: 81  ctgcactgcctcttccctggc 101




>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
          Length = 125

 Score = 65.9 bits (33), Expect = 7e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 47  tgttttggctctacccatgcactgcctcttccctggc 83
           |||||| ||||||||||||||||||||||||||||||
Sbjct: 71  tgtttttgctctacccatgcactgcctcttccctggc 107




>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
           cress)
          Length = 126

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 49  ttttggctctacccatgcactgcctcttccctggc 83
           ||||| |||||||||||||||||||||||||||||
Sbjct: 73  ttttgtctctacccatgcactgcctcttccctggc 107




>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
          Length = 137

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 47  tgttttggctctacccatgcactgcctcttccctggc 83
           |||| ||||||||| ||||||||||||||||||||||
Sbjct: 82  tgttgtggctctactcatgcactgcctcttccctggc 118



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  gggaacaggcagagcatggatggagcta 32
          ||||| ||||||||||||||||||||||
Sbjct: 23 gggaagaggcagagcatggatggagcta 50




>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
           (papaya)
          Length = 124

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 49  ttttggctctacccatgcactgcctcttccctggc 83
           |||||| ||||||| ||||||||||||||||||||
Sbjct: 71  ttttggttctacccctgcactgcctcttccctggc 105




>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
           (barrel medic)
          Length = 123

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 47  tgttttggctctacccatgcactgcctcttccctggc 83
           |||| |||||| || ||||||||||||||||||||||
Sbjct: 68  tgttgtggctccactcatgcactgcctcttccctggc 104




>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
          Length = 156

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 62  catgcactgcctcttccctggc 83
           ||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggc 138