miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 194 bits (98), Expect = 3e-49
Identities = 153/169 (90%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
|||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 13 gagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattc 72
Query: 61 atccaaatgctgagtgaaagcga-agaaagata--ctcagcaaatgagtgaatgatgcgg 117
||||||||| ||||| ||| | ||||| ||| |||| ||||||||||||||||||||
Sbjct: 73 atccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaatgatgcgg 132
Query: 118 gagacaaattgattcttaagtgtcctgtacttggactgaagggagctcc 166
|||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct: 133 gagacaaattgaatcttaagtttcctatacttggactgaagggagctcc 181
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 149 bits (75), Expect = 1e-35
Identities = 146/167 (87%), Gaps = 2/167 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
||||||||||||||||||| ||||||| | || ||||| ||||||||||||||||||||
Sbjct: 12 gagctttcttcagtccactcatgggtggtagtaggattt-aattagctgccgactcattc 70
Query: 61 atccaaatgctgagtgaaagcgaagaaagat-actcagcaaatgagtgaatgatgcggga 119
|||||||| |||||| |||| | |||| || ||| |||||||||||||||||||||
Sbjct: 71 atccaaatactgagttaaaggacaaggagattacccagtaaatgagtgaatgatgcggga 130
Query: 120 gacaaattgattcttaagtgtcctgtacttggactgaagggagctcc 166
|||||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 131 gacaaattgaatcctaagcttcctgtacttggactgaagggagctcc 177
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 111 bits (56), Expect = 3e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattgattcttaagtgtcctgtacttggactgaag 158
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 143 aaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaag 202
Query: 159 ggagctcc 166
||||||||
Sbjct: 203 ggagctcc 210
Score = 85.7 bits (43), Expect = 2e-16
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
||||||||||||||||||| ||||||| | || ||||| ||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgactcattc 71
Query: 61 atccaaatgctgagt 75
|||||||| ||||||
Sbjct: 72 atccaaatactgagt 86
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 97.6 bits (49), Expect = 5e-20
Identities = 136/166 (81%), Gaps = 13/166 (7%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
||||||||||||||||| | ||||||| |||||| | |||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccattcatgggtggttataagaat-caattagctgccgactcattc 71
Query: 61 atccaaatgctgagtgaaagcgaagaaagatactcagcaaatgagtgaatgatgcgggag 120
||||||||||||| || || |||| ||||||||||||||||||||||
Sbjct: 72 atccaaatgctgaatgtg------------tattcagtaaatgagtgaatgatgcgggag 119
Query: 121 acaaattgattcttaagtgtcctgtacttggactgaagggagctcc 166
|||||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 120 acaaattgtatcttaagcttcctgttattggactgaagggagctcc 165
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 83.8 bits (42), Expect = 7e-16
Identities = 137/167 (82%), Gaps = 10/167 (5%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactc-att 59
||||||||||||||||||| ||||||| || || |||| |||||||||||||||| |||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattg-aattagctgccgactccatt 71
Query: 60 catccaaatgctgagtgaaagcgaagaaagatactcagcaaatgagtgaatgatgcggga 119
||||||||| ||| || || | ||| ||| |||||| ||||||||||||||
Sbjct: 72 catccaaatactgtgttaaggac--------tacccagtaaatgattgaatgatgcggga 123
Query: 120 gacaaattgattcttaagtgtcctgtacttggactgaagggagctcc 166
||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct: 124 gacaaattggatcttaagctccctgtgcttggactgaagggagctcc 170
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 77.8 bits (39), Expect = 4e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 93 ctcagcaaatgagtgaatgatgcgggag-acaaattgattcttaagtgtcctgtacttgg 151
|||||||| ||||||||||| ||||||| |||| |||| |||| || ||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 152 actgaagggagctcc 166
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 38 ttcaattagctgccgactcattcatccaaatgctgag 74
||||||| |||||||||||||||||||||||| ||||
Sbjct: 37 ttcaatttgctgccgactcattcatccaaatgttgag 73
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 58.0 bits (29), Expect = 4e-08
Identities = 104/127 (81%), Gaps = 4/127 (3%)
Strand = Plus / Plus
Query: 41 aattagctgccgactcattcatccaaatgctgagtgaa-agcgaagaaagatactcagca 99
|||||| | ||||||||||||||||||| |||||| | ||| |||| ||| ||| |
Sbjct: 52 aattagttaccgactcattcatccaaatactgagttatgagctaagat---tacccagta 108
Query: 100 aatgagtgaatgatgcgggagacaaattgattcttaagtgtcctgtacttggactgaagg 159
||||| ||| |||||||||||||||||| | |||||| |||| | ||||||||||||
Sbjct: 109 aatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaagg 168
Query: 160 gagctcc 166
|||||||
Sbjct: 169 gagctcc 175
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 56.0 bits (28), Expect = 2e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattgattcttaagtgtcctgtacttggactgaag 158
|||||| ||||||||||| |||||||||||| |||| | | || | ||||||||||||
Sbjct: 112 aaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaag 171
Query: 159 ggagctcc 166
||||||||
Sbjct: 172 ggagctcc 179
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 38 ttcaattagctgccgactcattcatccaaat 68
||||||||||| |||||||||||||||||||
Sbjct: 49 ttcaattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattg 128
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 caattagctgccgactcattcatccaaat 68
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 caattagctgccgactcattcatccaaat 68
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattg 128
|||||| |||||||||||| ||||||||||
Sbjct: 114 aaatgaatgaatgatgcggtagacaaattg 143
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 caattagctgccgactcattcatccaaat 68
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattg 128
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 40 caattagctgccgactcattcatccaaatgctgagt 75
||||||||| |||| |||||||||||||| ||||||
Sbjct: 51 caattagcttccgaatcattcatccaaatactgagt 86
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcatccaaa 67
||||||||||||||||||||| ||||
Sbjct: 42 attagctgccgactcattcattcaaa 67
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 aattagctgccgactcattcat 62
||||||||||||||||||||||
Sbjct: 54 aattagctgccgactcattcat 75
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcatccaaa 67
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 41 aattagctgccgactcattcatccaaatgc 70
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 41 aattagctgccgactcattcatccaaatgc 70
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 41 aattagctgccgactcattcatccaaatgc 70
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcacccacatgc 81
