miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02000074.1/110075-110270 29760:Vitis vinifera
Length = 196
Score = 60.0 bits (30), Expect = 1e-08
Identities = 46/50 (92%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 114 tgggagatgagtttaccttgatcttt-tggtattggagtgaagggagctc 162
||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct: 133 tgggagatgagggtactttgatctttctggtattggagtgaagggagctc 182
>RF00638;MIR159;ABIM01022236.1/33140-32940 3649:Carica papaya
(papaya)
Length = 201
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 137 ttttggtattggagtgaagggagctc 162
||||||||||||||||||||||||||
Sbjct: 162 ttttggtattggagtgaagggagctc 187
>RF00638;MIR159;AASG02000051.1/79825-80023 3988:Ricinus communis
(castor bean)
Length = 199
Score = 52.0 bits (26), Expect = 2e-06
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 98 aagggtttgcatgccctgggagatgagtttaccttgatcttttgg-tattggagtgaagg 156
||||||||||||| ||||||||| | | ||||||| |||||| ||||||||||||||
Sbjct: 120 aagggtttgcatgacctgggagacgtggttaccttcttcttttttatattggagtgaagg 179
Query: 157 gagctc 162
||||||
Sbjct: 180 gagctc 185
>RF00638;MIR159;AARH01006065.1/463210-463415 3694:Populus
trichocarpa
Length = 206
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 136 cttttggtattggagtgaagggagctc 162
||||| |||||||||||||||||||||
Sbjct: 166 ctttttgtattggagtgaagggagctc 192
>RF00638;MIR159;AARH01006065.1/468133-468327 3694:Populus
trichocarpa
Length = 195
Score = 44.1 bits (22), Expect = 6e-04
Identities = 56/66 (84%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 98 aagggtttgcatgccctgggagatgagtttaccttgatctttt-ggtattggagtgaagg 156
|||||| |||||| || ||||||| | || |||||||||||| ||| |||| |||||||
Sbjct: 116 aagggtctgcatgtgctaggagatgtggttgccttgatctttttggtcttggggtgaagg 175
Query: 157 gagctc 162
||||||
Sbjct: 176 gagctc 181
