miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 89.7 bits (45), Expect = 5e-18
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccattttcagagcccatcggtatttccaatggcctccgtgga 60
|||||||||||||||||||||||| ||||||||| ||| || | ||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaacgg-atcctcgatggcctccgtgga 62
Query: 61 tggcgtatgaggagcca 77
|||||||||||||||||
Sbjct: 63 tggcgtatgaggagcca 79
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 81.8 bits (41), Expect = 1e-15
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccattttcagagcccatcggtatttccaatggcctccgtgga 60
|||||||||||||||||||||||| ||||||||| ||| | | | ||||||| ||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccggcacat-cgatggccttcgtgga 62
Query: 61 tggcgtatgaggagcca 77
|||||||||||||||||
Sbjct: 63 tggcgtatgaggagcca 79
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccattttcagagcccatcg-gtatttccaatggcctccgtgg 59
|||||||||||||||||||||||| ||||||||| || | || | ||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccgagcat---cgctggcctccgtgg 60
Query: 60 atggcgtatgaggagcca 77
||||||||||||||||||
Sbjct: 61 atggcgtatgaggagcca 78
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccattttcagagcccatcg-gtatttccaatggcctccgtgg 59
|||||||||||||||||||||| | | |||||||||| |||| | ||| |||||||||
Sbjct: 4 tgcctggctccctgtatgccatatgctgagcccatcgagtat---cgatgacctccgtgg 60
Query: 60 atggcgtatgaggagcca 77
||||||||||||||||||
Sbjct: 61 atggcgtatgaggagcca 78
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccattttcagagcccatcggtatttccaatggcctccgtgga 60
|||||||||||||||||||||||| ||||| ||||| | | ||||| ||| ||||
Sbjct: 4 tgcctggctccctgtatgccatttggagagctcatcgaaacat-caatgatctctttgga 62
Query: 61 tggcgtatgaggagccaagca 81
|||||||||||||||||||||
Sbjct: 63 tggcgtatgaggagccaagca 83
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 gtggatggcgtatgaggagccaagca 81
||||||||||||||||||||||||||
Sbjct: 58 gtggatggcgtatgaggagccaagca 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccattt 24
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccattt 27
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccattt 24
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccattt 27
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccattt 24
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccattt 27
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 atggcgtatgaggagccaagca 81
||||||||||||||||||||||
Sbjct: 65 atggcgtatgaggagccaagca 86
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccattt 24
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccattt 27
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
