miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 61.9 bits (31), Expect = 3e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatctgagtgggaatatcgagctgctggtctatggat 62
|||||||||||||||||||||||||||| |||| | || ||||||||| ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 63 ccc 65
|||
Sbjct: 73 ccc 75
Score = 52.0 bits (26), Expect = 2e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 96 ttgtggcttgcatacgccaggagattcattatcctttttctgatccttttttggattgaa 155
|||||||||||||| |||||| ||||||| | | | | ||||||| |||||||||||
Sbjct: 113 ttgtggcttgcatatctcaggagcttcattaccttgtattagatccttgtttggattgaa 172
Query: 156 gggagctcta 165
||||||||||
Sbjct: 173 gggagctcta 182
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 58.0 bits (29), Expect = 4e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 22 agaggatctgagtgggaatatcgagctgctggtctatggatccctcaagtcctatct 78
||||||||| || ||||| || ||||||||| |||||||||||||||| ||||||||
Sbjct: 32 agaggatctaagagggaaaattgagctgctgatctatggatccctcaa-tcctatct 87
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tagagctccttgaagtccaatagaggat 28
||||||||||||||||||||||||||||
Sbjct: 11 tagagctccttgaagtccaatagaggat 38
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 138 atccttttttggattgaagggagctcta 165
|||||| |||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctcta 182
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 54.0 bits (27), Expect = 6e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatctgagtgggaatatcgagctgctggtctatggat 62
|||||||||||||||||||||||| ||| | |||| | || ||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 63 ccc 65
|||
Sbjct: 73 ccc 75
Score = 52.0 bits (26), Expect = 2e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 96 ttgtggcttgcatacgccaggagattcattatcctttttctgatccttttttggattgaa 155
|||||||||||||| |||||| | |||||||| || ||||||| |||||||||||
Sbjct: 113 ttgtggcttgcatatctcaggagctgcattatccaagtttagatccttgtttggattgaa 172
Query: 156 gggagctcta 165
||||||||||
Sbjct: 173 gggagctcta 182
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 136 tgatccttttttggattgaagggagctcta 165
||||| ||||||||||||||||||||||||
Sbjct: 159 tgatcattttttggattgaagggagctcta 188
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 137 gatccttttttggattgaagggagctcta 165
||||| |||||||||||||||||||||||
Sbjct: 146 gatccctttttggattgaagggagctcta 174
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagagg 26
||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagagg 36
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 137 gatccttttttggattgaagggagctct 164
|||| |||||||||||||||||||||||
Sbjct: 138 gatctttttttggattgaagggagctct 165
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaataga 24
||||||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaataga 22
