miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 333 bits (168), Expect = 5e-91
Identities = 171/172 (99%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 72
Query: 61 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 73 tgcctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgaccc 132
Query: 121 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 184
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 268 bits (135), Expect = 2e-71
Identities = 165/174 (94%), Gaps = 2/174 (1%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 72
Query: 61 tgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatgac 118
| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 73 tacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatgac 132
Query: 119 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 172
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 186
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 131 bits (66), Expect = 3e-30
Identities = 146/172 (84%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 61 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 120
| ||||| |||| ||| | | ||| ||||||||||||||| ||||||||||
Sbjct: 73 tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124
Query: 121 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 172
|||||||||||||||||| |||| | || |||||||||||||||||||||
Sbjct: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 97.6 bits (49), Expect = 5e-20
Identities = 143/173 (82%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 61 tgcctctctggtgca-gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacc 119
| ||||| ||||| | | | | || ||||||||||||||||| |||||||||
Sbjct: 73 tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132
Query: 120 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 172
||||||||||||||||||| |||| | || || ||||||||||||||||||
Sbjct: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggagctc 185
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 85.7 bits (43), Expect = 2e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 61 tgcctct 67
| |||||
Sbjct: 73 tacctct 79
Score = 63.9 bits (32), Expect = 7e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 93 cctgcacttgcatgggtgtgcatgacccgggagatgaacc 132
||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 98 cctgcacttgcatgggtttgcatgacctgggagatgaacc 137
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 79.8 bits (40), Expect = 1e-14
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 gagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgg 59
|||||||||| ||||||||| |||||| ||||||||| || |||||||||||||||||||
Sbjct: 13 gagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatgg 72
Query: 60 atgcctct 67
|| |||||
Sbjct: 73 atacctct 80
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 77.8 bits (39), Expect = 4e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 1 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 60
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 61 tgcctct 67
| |||||
Sbjct: 73 tacctct 79
