miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
          Length = 104

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 1  aagctcaggagggatagcgccatggatgatc 31
          |||||||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggatgatc 45




>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
          (castor bean)
          Length = 138

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 1  aagctcaggagggatagcgccatggatg 28
          ||||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggatg 42



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 73  tatagcgctatccatcctgagttt 96
           ||||||||||||||||||||||||
Sbjct: 101 tatagcgctatccatcctgagttt 124




>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
          Length = 99

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcgccatgg 25
          |||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39




>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
          (thale cress)
          Length = 120

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcgccatgg 25
          |||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39




>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
          (papaya)
          Length = 133

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38




>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
          pekinensis
          Length = 110

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38




>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
          (thale cress)
          Length = 99

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38




>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
          trichocarpa
          Length = 129

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38




>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
          trichocarpa
          Length = 133

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38




>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
          Length = 146

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38




>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
          pekinensis
          Length = 97

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aagctcaggagggatagcgccat 23
          |||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37




>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
          (barrel medic)
          Length = 118

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aagctcaggagggatagcgccat 23
          |||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37




>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
          Length = 125

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  aagctcaggagggatagcgcca 22
          ||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcca 36