miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 79.8 bits (40), Expect = 1e-14
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| ||||||||||||||||| || |||||| || ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 61 tccacagtccta 72
||||||| ||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 63.9 bits (32), Expect = 6e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 99 tgcggcttgcatatgttaggagctttattacctctttgttttatctttctttggattgaa 158
|||||||||||||| | |||||||||||||||| |||| |||||| |||||||||||
Sbjct: 98 tgcggcttgcatatctcaggagctttattacct-aatgttagatctttttttggattgaa 156
Query: 159 gggagctc 166
||||||||
Sbjct: 157 gggagctc 164
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 63.9 bits (32), Expect = 6e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| ||||| | |||| ||||| || |||||||| | |||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga- 71
Query: 61 tccacagtccta 72
||||||||||||
Sbjct: 72 tccacagtccta 83
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 90 ggataggcttgcggcttgcatatgttaggagctttatt 127
||||||| ||||||||||||||| | ||||||||||||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttatt 134
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 63.9 bits (32), Expect = 6e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| ||||||| ||| ||||| || ||||||||| ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 61 tccacagtccta 72
|||||| ||||
Sbjct: 73 cccacagcccta 84
Score = 58.0 bits (29), Expect = 4e-08
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 90 ggataggcttgcggcttgcatatgttaggagctttattacctctttgttttatctttctt 149
||||||||||| ||||||||||| | |||||||| ||||||| | | || ||| || ||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagcttcattacct-tgtattagatccttgtt 163
Query: 150 tggattgaagggagctc 166
|||||||||||||||||
Sbjct: 164 tggattgaagggagctc 180
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 58.0 bits (29), Expect = 4e-08
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 105 ttgcatatgttaggagctttatt--acctctttgttttatctttctttggattgaaggga 162
|||||||||| |||||||||||| ||| |||||||| ||| || |||||||||||||||
Sbjct: 124 ttgcatatgtcaggagctttattttacc-ctttgtttgatcattttttggattgaaggga 182
Query: 163 gctc 166
||||
Sbjct: 183 gctc 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| ||| ||| | |||| || || ||||||||| ||||||||
Sbjct: 13 gagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggat 72
Query: 61 tccacagtccta 72
||| ||| ||||
Sbjct: 73 tcctcagcccta 84
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 48.1 bits (24), Expect = 4e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| ||||| | || | ||||| || ||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 61 tccacagtccta 72
|||||| ||||
Sbjct: 73 cccacagcccta 84
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 173 ttctttggattgaagggagctc 194
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 169 ttctttggattgaagggagctc 190
