miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 115 bits (58), Expect = 9e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 tccaaaatagatgacccaactttgtactaaagttaatacaaagttggttcatctattttg 72
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 17 tccaaaatagatgacccaactttgtactaaagttagtacaaagttgagtcatctattttg 76
Query: 73 gaacggagggagta 86
||| ||||||||||
Sbjct: 77 gaatggagggagta 90
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 13 tccaaaatagatgacccaactttgtactaaagttaatacaaagttggttcatctattttg 72
||||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 78 tccaaaatagatgactcaactttgtactaactttagtacaaagttgggtcatctattttg 19
Query: 73 gaacggagggagta 86
||| ||||| ||||
Sbjct: 18 gaatggaggaagta 5
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 115 bits (58), Expect = 9e-26
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 90 tactccctccgttccaaaatagatgacccaactttacactaaagttagtacaaagttgag 31
Query: 61 tcatctattttggaacggagggagta 86
||||||||||||||||||||||||||
Sbjct: 30 tcatctattttggaacggagggagta 5
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || ||||||||||||||| |||||||||||||| ||| | ||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttgtactaactttagtgtaaagttggg 64
Query: 61 tcatctattttggaacggagggagta 86
||||||||||||||||||||||||||
Sbjct: 65 tcatctattttggaacggagggagta 90
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 107 bits (54), Expect = 2e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 13 tccaaaatagatgacccaactttgtactaaagttaatacaaagttggttcatctattttg 72
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 17 tccaaaatagatgacccaactttgtactaaagttagtacaaagttgagtcatctattttg 76
Query: 73 gaacggagggagta 86
|||||||| ||||
Sbjct: 77 aaacggaggaagta 90
Score = 95.6 bits (48), Expect = 9e-20
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 15 caaaatagatgacccaactttgtactaaagttaatacaaagttggttcatctattttgga 74
||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 76 caaaatagatgactcaactttgtactaactttagtacaaagttgggtcatctattttgga 17
Query: 75 acggagggagta 86
||||| ||||||
Sbjct: 16 acggaaggagta 5
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 15 caaaatagatgacccaactttgtactaaagttaatacaaagttggttcatctattttgga 74
||||||||||||| |||||||||||||||| || |||||||||| || |||||||| ||
Sbjct: 19 caaaatagatgactcaactttgtactaaagatagtacaaagttgagtcgtctattttaga 78
Query: 75 acggagggagta 86
||||||||||||
Sbjct: 79 acggagggagta 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttggt 60
|||||||| || || |||||||| ||| ||||||||||||| ||| ||||||||||
Sbjct: 90 tactccctccgttctaaaatagacgactcaactttgtactatctttagtacaaagttgag 31
Query: 61 tcatctattttg 72
||||||||||||
Sbjct: 30 tcatctattttg 19
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 77.8 bits (39), Expect = 2e-14
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 40 taaagttaatacaaagttggttcatctattttggaacggagggagta 86
|||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 51 taaagttaatacaaagttgggtcatctattttggaacggaaggagta 5
Score = 69.9 bits (35), Expect = 5e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 40 taaagttaatacaaagttggttcatctattttggaacggagggagta 86
|||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct: 70 taaagttaatacaaagttgggtcatctattttgaaacggaaggagta 116
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tccaaaatagatgacccaactttgta 38
||||||||||||||||||||||||||
Sbjct: 17 tccaaaatagatgacccaactttgta 42
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaatagatgacccaactttgta 38
||||||||||||||||||||||||
Sbjct: 102 caaaatagatgacccaactttgta 79
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 75.8 bits (38), Expect = 8e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 29 caactttgtactaaagttaatacaaagttggttcatctattttggaacggagggagta 86
|||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 44 caactttgtactaaagttaatacaaagttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 69.9 bits (35), Expect = 5e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 40 taaagttaatacaaagttggttcatctattttggaacggagggagta 86
|||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 55 taaagttagtaaaaagttgggtcatctattttggaacggagggagta 101
Score = 65.9 bits (33), Expect = 8e-11
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 30 aactttgtactaaagttaatacaaagttggttcatctattttggaacggagggagta 86
|||||| || |||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct: 61 aactttatattaaagttagtataaagttgagtcatctattttggaacggagggagta 5
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 49 tacaaagttggttcatctattttggaacggagggagta 86
||||||||||| ||||||||||||||||||||||||||
Sbjct: 27 tacaaagttgggtcatctattttggaacggagggagta 64
Score = 65.9 bits (33), Expect = 8e-11
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtacta 41
|||||||| || |||||||||||||||||||||||||||||
Sbjct: 64 tactccctccgttccaaaatagatgacccaactttgtacta 24
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 65 ctattttggaacggagggagta 86
||||||||||||||||||||||
Sbjct: 26 ctattttggaacggagggagta 5
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 29 caactttgtactaaagttaatacaaagttggttcatctattttggaacggagggagta 86
|||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 44 caaccttgtactaaagttaatacaaagttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 67.9 bits (34), Expect = 2e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 33 tttgtactaaagttaatacaaagttggttcatctattttggaacggagggagta 86
||||||||| ||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct: 48 tttgtactatagttagtacaaagttgagtcatctattttagaacggagggagta 101
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 49 tacaaagttggttcatctattttggaacggagggagta 86
|||||||||| ||||||||||||||||||||||||||
Sbjct: 42 tacaaagttgagtcatctattttggaacggagggagta 5
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 14 ccaaaatagatgacccaactttgtactaaagttaatacaaagttggttcatctattttgg 73
|||||||| |||| ||||||||||||||||||| || ||||||| ||| || |||||
Sbjct: 18 ccaaaataagtgactcaactttgtactaaagttagtataaagttgagtcacttaatttgg 77
Query: 74 aacggagggagta 86
||||||||||||
Sbjct: 78 gacggagggagta 90
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 51 caaagttggttcatctattttggaacggagggagta 86
|||||||| ||||||||||||||||||||||||||
Sbjct: 40 caaagttgagtcatctattttggaacggagggagta 5
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 51 caaagttggttcatctattttggaacggagggagt 85
|||||||| |||||||||||||||||||||||||
Sbjct: 41 caaagttgagtcatctattttggaacggagggagt 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tactcccttcgctccaaaatagatgacccaactttg 36
|||||||| || ||||||||||||||| ||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttg 40
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2 actcccttcgctccaaaatagatgacccaactttg 36
||||||| || ||||||||||||||| ||||||||
Sbjct: 75 actccctccgttccaaaatagatgactcaactttg 41
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 29 caactttgtactaaagttaatacaaagttggttcatctattttggaacggagggagta 86
||||||||||||||||||| |||||| ||| || |||||||| ||||||||||||
Sbjct: 92 caactttgtactaaagttagtacaaacttgagacagttattttgggacggagggagta 149
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 1 tactcccttcgctccaaaatagatgacccaactttgtactaaagttaatacaaagttg 58
|||||||| || |||||||| |||| ||||||||||||||||||| | ||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaactttgtactaaagttagtgcaaagttg 43
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 29 caactttgtactaaagttaatacaaagttggttcatctattttggaacggagggagta 86
|||||||| ||||| ||| |||||||||| ||| |||||||| ||||||||||||
Sbjct: 43 caactttgcactaactttagtacaaagttgagtcacttattttgggacggagggagta 100
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 29 caactttgtactaaagttaatacaaagttggttcatctattttggaacggagggagta 86
||||||||||||| || || |||||||||| ||| ||||||| |||||||||||||
Sbjct: 44 caactttgtactagagctagtacaaagttgagacatttattttgaaacggagggagta 101
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 29 caactttgtactaaagttaatacaaagttg 58
||||||||||||||||||| ||||||||||
Sbjct: 51 caactttgtactaaagttagtacaaagttg 80
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 29 caactttgtactaaagttaatacaaagttggttcatctattttggaacggagggagta 86
||||||||||||||||||| ||||||||| || |||||||| ||||||||||||
Sbjct: 44 caactttgtactaaagttagtacaaagttaagacacttattttgggacggagggagta 101
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 24 tgacccaactttgtactaaagttaatacaaagttg 58
|||| |||||| |||||||||||| ||||||||||
Sbjct: 78 tgactcaacttcgtactaaagttagtacaaagttg 44
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 65 ctattttggaacggagggagta 86
||||||||||||||||||||||
Sbjct: 26 ctattttggaacggagggagta 5
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 29 caactttgtactaaagttaatacaaagttg 58
||||||||||||| || |||||||||||||
Sbjct: 44 caactttgtactagagctaatacaaagttg 73
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 29 caactttgtactaaagttaatacaaagttggttcatctattttggaacggagggagta 86
||||||||||||| || || |||||| ||| || |||||||||||||||||||||
Sbjct: 62 caactttgtactagagctagtacaaatttgagacacttattttggaacggagggagta 5
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 41 aaagttaatacaaagttggttcatctattttggaacggagggagta 86
||||||| |||||||||| ||| |||||||| ||||||||||||
Sbjct: 50 aaagttagtacaaagttgagtcacttattttgggacggagggagta 5
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 61 tcatctattttggaacggagggagta 86
||||||| ||||||||||||||||||
Sbjct: 30 tcatctaatttggaacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 tcatctattttggaacggagggagta 86
||||||| ||||||||||||||||||
Sbjct: 106 tcatctaatttggaacggagggagta 131
