miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 75.8 bits (38), Expect = 2e-13
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 92 taggcttatggcttgcatatttcaggagctttattaccttttagtttgatctttatttgg 151
||||||| |||||||||||| |||||||||| |||||||| || || |||| || |||||
Sbjct: 108 taggcttgtggcttgcatatctcaggagcttcattaccttgta-ttagatccttgtttgg 166
Query: 152 attgaagggagctc 165
||||||||||||||
Sbjct: 167 attgaagggagctc 180
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 21 agaggatcttgctgggtagatcaagctgctggactatggatccca 65
||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 32 agaggatcttgatgggtagattgagctgctgagctatggatccca 76
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 73.8 bits (37), Expect = 7e-13
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 101 ggcttgcatatttcaggagctttattaccttttagtttgatctttatttggattgaaggg 160
||||||||||| |||||||||||||||||| | ||| ||||||| ||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaat-gttagatctttttttggattgaaggg 159
Query: 161 agctc 165
|||||
Sbjct: 160 agctc 164
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 58.0 bits (29), Expect = 4e-08
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 104 ttgcatatttcaggagctttatt--accttttagtttgatctttatttggattgaaggga 161
|||||||| |||||||||||||| ||| ||| |||||||| || |||||||||||||||
Sbjct: 124 ttgcatatgtcaggagctttattttacccttt-gtttgatcattttttggattgaaggga 182
Query: 162 gctc 165
||||
Sbjct: 183 gctc 186
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 50.1 bits (25), Expect = 1e-05
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 101 ggcttgcatatttcaggagctttattaccttttagtttgatctttatttggattgaaggg 160
||||||||||| |||||||||||||| ||| | ||| |||| | ||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagctttattgcctaat-gttagatccctttttggattgaaggg 167
Query: 161 agctc 165
|||||
Sbjct: 168 agctc 172
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 21 agaggatcttgctgggtagatcaagctgctggactatggatcc 63
||||| ||||||||||||||| |||||||| ||||||||||
Sbjct: 32 agaggttcttgctgggtagattaagctgctaagctatggatcc 74
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 92 taggcttatggcttgcatatttcaggagct 121
||||||| |||||||||||| |||||||||
Sbjct: 108 taggcttgtggcttgcatatctcaggagct 137
