miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 244 bits (123), Expect = 3e-64
Identities = 167/179 (93%), Gaps = 2/179 (1%)
Strand = Plus / Plus
Query: 1 gagctccttaaagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgga 60
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 13 gagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatgga 72
Query: 61 tcccataagccctaa-ccttaaacatagaaaaaggattttggttatatggcttgcatatc 119
||||||||||||||| |||| | | ||||||||||| |||||||||| |||||||||
Sbjct: 73 tcccataagccctaatccttgtaaagtaaaaaaggattt-ggttatatggattgcatatc 131
Query: 120 tcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctc 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctc 190
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 93.7 bits (47), Expect = 8e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 gagctccttaaagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgga 60
||||||||| |||||||| ||| |||||||||||| ||| |||||||||||||||||||
Sbjct: 13 gagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatgga 72
Query: 61 tcccataagcc 71
|||||||||||
Sbjct: 73 tcccataagcc 83
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 ggcttgcatatctcaggagcttta 131
||||||||||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagcttta 124
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 ggcttgcatatctcaggagcttta 131
||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 107 tggcttgcatatctcaggagctt 129
|||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagctt 138
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 tggcttgcatatctcaggagct 128
||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagct 137
