miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 196 bits (99), Expect = 6e-50
Identities = 135/150 (90%), Gaps = 14/150 (9%)
Strand = Plus / Minus
Query: 1 ctgcacctgcacctgcacctcaactaagcttattagtttccatatctaacactctatatc 60
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ctgcacttgcacctgcacctcaactaagcttattagtttccatatctaa----------- 107
Query: 61 taattgtcccacatactgtatcgacagaacttgattttgtttgtggagtcaaaaacaaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ---ttgtcccacatactgtatcgacagaacttgattttgtttgtggagtcaaaaacaaaa 50
Query: 121 caaacgcaaaagatgcaggtgcaaatgcag 150
||||||||||||||||||||||||||||||
Sbjct: 49 caaacgcaaaagatgcaggtgcaaatgcag 20
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 ctgcacctgcacctgcacctcaa 23
|||||||||||||||||||||||
Sbjct: 127 ctgcacctgcacctgcacctcaa 105
