miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 141 bits (71), Expect = 3e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagatcactaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagatcactaca 70
Query: 61 tgtacagctcc 71
|||||||||||
Sbjct: 71 tgtacagctcc 81
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 98 gcgccatggaagctcaagaaagctgtggga 127
||||||||||||||||||||||||||||||
Sbjct: 108 gcgccatggaagctcaagaaagctgtggga 137
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctttgccttgcttaa 36
|||||||||||||||||||||| ||||| |||||||
Sbjct: 11 ttccacagctttcttgaacttccttgccatgcttaa 46
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 101 ccatggaagctcaagaaagctgtggga 127
|||||||||||||||||||| ||||||
Sbjct: 120 ccatggaagctcaagaaagccgtggga 146
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttcttt 25
|||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttcttt 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gaagctcaagaaagctgtggga 127
||||||||||||||||||||||
Sbjct: 127 gaagctcaagaaagctgtggga 148
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttcttt 25
|||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttcttt 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gaagctcaagaaagctgtggga 127
||||||||||||||||||||||
Sbjct: 72 gaagctcaagaaagctgtggga 93
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttcttt 25
|||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttcttt 35
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana (thale
cress)
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tggaagctcaagaaagctgtggga 127
||||||||||||||||||||||||
Sbjct: 102 tggaagctcaagaaagctgtggga 125
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctt 24
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttctt 34
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctt 24
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttctt 34
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttct 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttct 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
Japonica Group
Length = 142
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttct 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 94 ttccacagctttcttgaacttc 73
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gaagctcaagaaagctgtggga 127
||||||||||||||||||||||
Sbjct: 81 gaagctcaagaaagctgtggga 102
