miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 83.8 bits (42), Expect = 7e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 62
|||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 63 tccaca 68
||||||
Sbjct: 73 tccaca 78
Score = 54.0 bits (27), Expect = 6e-07
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 98 taggcttgtggcttgcatacctcaggagctgcatta-cctgagttgcatcatgttttgga 156
|||||||| || ||||||| |||||||||||||||| ||| || | ||| | ||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagcttaatccttgtttgga 167
Query: 157 ttgaagggagctcta 171
|||||||||||||||
Sbjct: 168 ttgaagggagctcta 182
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 79.8 bits (40), Expect = 1e-14
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatga 60
|||||||||||||||||||||||| ||| ||| | ||| ||||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 70
Query: 61 attccaca 68
|| |||||
Sbjct: 71 atcccaca 78
Score = 65.9 bits (33), Expect = 2e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 96 gataggcttgtggcttgcatacctcaggagctgcattacct 136
||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagcttcattacct 146
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 75.8 bits (38), Expect = 2e-13
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 62
|||||||||||||||||||||||| | |||| ||| ||| |||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 63 tccaca 68
|||||
Sbjct: 61 cccaca 66
Score = 50.1 bits (25), Expect = 1e-05
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 107 ggcttgcatacctcaggagctgcattacctga-gttgcatcatgttttggattgaaggga 165
|||||||||| |||||||||| ||||||| | ||| ||| | ||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaaggga 160
Query: 166 gctct 170
|||||
Sbjct: 161 gctct 165
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 96 gataggcttgtggcttgcatacctcaggagctgcatta 133
||||||||||||||||||||| ||||||||||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagctgcatta 143
Score = 58.0 bits (29), Expect = 4e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctga 53
|||||||||||||||||||||||| | | || || ||| ||||||||||||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctga 63
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 61.9 bits (31), Expect = 3e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatg 59
|||||||||||||||||||||||| | | ||||| ||| |||| ||||||| |||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 150 ttttggattgaagggagctcta 171
||||||||||||||||||||||
Sbjct: 153 ttttggattgaagggagctcta 174
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 52.0 bits (26), Expect = 3e-06
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagatgttgctaggtt-gattgagctgctgagctatg 59
|||||||||||||||||||| ||||||| | | ||||| |||||||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaacagaagatctaac-aggttagattgagctgctgacctatg 69
Query: 60 aattcc 65
|||||
Sbjct: 70 gattcc 75
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 144 atcatgttttggattgaagggagctcta 171
||||| ||||||||||||||||||||||
Sbjct: 161 atcattttttggattgaagggagctcta 188
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 96 gataggcttgtggcttgcatacctcaggagctgcat 131
||||||||| |||||||||| || ||||||||||||
Sbjct: 187 gataggcttatggcttgcatgccccaggagctgcat 222
