miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 83.8 bits (42), Expect = 8e-16
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||||| ||| | | ||||| |||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttg-atgggtagattgagctgctgagctatgga 71
Query: 61 tcccacagtcctat 74
|||||||| |||||
Sbjct: 72 tcccacagccctat 85
Score = 63.9 bits (32), Expect = 7e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 112 gataggcttgtggcttgcatatttctggagcttcattacc 151
|||||||||||||||||||||| || ||||||||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagcttcattacc 145
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 71.9 bits (36), Expect = 3e-12
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||||||||| || ||||| ||| ||||||| |||||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagctatgga 71
Query: 61 tcccacagtcctatgtatca 80
| |||||||||||| |||||
Sbjct: 72 t-ccacagtcctatctatca 90
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 60.0 bits (30), Expect = 1e-08
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttact-gggtagattgagctgctgacttatgga 71
Query: 61 tcccacagtcctat 74
|||||||| |||||
Sbjct: 72 tcccacagccctat 85
Score = 56.0 bits (28), Expect = 2e-07
Identities = 67/78 (85%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 112 gataggcttgtggcttgcatatttctggagcttcattaccccttaagttt-taccctttt 170
|||||||||||||||||||||| || |||||| ||||| || |||||| | |||| |
Sbjct: 106 gataggcttgtggcttgcatatctcaggagctgcattatcc---aagtttagatccttgt 162
Query: 171 ttggattgaagggagctc 188
||||||||||||||||||
Sbjct: 163 ttggattgaagggagctc 180
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||||| | | ||| |||| |||||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgca-gggttgattgagctgccgagctatgga 71
Query: 61 tcccacagtccta 73
| |||||| ||||
Sbjct: 72 ttccacagcccta 84
Score = 56.0 bits (28), Expect = 2e-07
Identities = 64/75 (85%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 114 taggcttgtggcttgcatatttctggagcttcattaccccttaagttttacccttttttg 173
|||||||| || |||||||| || |||||| |||||||| |||| || | |||| ||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccc--taagcttaatccttgtttg 165
Query: 174 gattgaagggagctc 188
|||||||||||||||
Sbjct: 166 gattgaagggagctc 180
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 52.0 bits (26), Expect = 3e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||| | || || ||||| || |||||||||||||||| |
Sbjct: 1 gagctccttgaagtccaatagaagctcctgct-gggtagatcgagctgctgagctatgaa 59
Query: 61 tcccacagtcctat 74
|||||||| |||||
Sbjct: 60 tcccacagccctat 73
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 167 ttttttggattgaagggagctc 188
||||||||||||||||||||||
Sbjct: 143 ttttttggattgaagggagctc 164
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 52.0 bits (26), Expect = 3e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||| | |||| || || || ||||||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaacagaagatctaaca-ggttagattgagctgctgacctatgga 71
Query: 61 tcccacagtcctat 74
| || ||| |||||
Sbjct: 72 ttcctcagccctat 85
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 167 ttttttggattgaagggagctc 188
||||||||||||||||||||||
Sbjct: 165 ttttttggattgaagggagctc 186
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 33 agggtaaattgagctgctgagctatggatcccacagtcctat 74
|||| ||||||||||||||| ||||||||||| || ||||||
Sbjct: 44 agggaaaattgagctgctgatctatggatccctcaatcctat 85
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 159 ttttacccttttttggattgaagggagctc 188
|||||| ||| |||||||||||||||||||
Sbjct: 161 ttttactcttctttggattgaagggagctc 190
