miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
          Length = 200

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 136 tgatccttttttggattgaagggagctcta 165
           ||||| ||||||||||||||||||||||||
Sbjct: 159 tgatcattttttggattgaagggagctcta 188




>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
          Length = 186

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 137 gatccttttttggattgaagggagctcta 165
           ||||| |||||||||||||||||||||||
Sbjct: 146 gatccctttttggattgaagggagctcta 174




>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
           (castor bean)
          Length = 194

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 137 gatccttttttggattgaagggagctcta 165
           ||||||| |||||||||||||||||||||
Sbjct: 154 gatccttgtttggattgaagggagctcta 182




>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
          Length = 194

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 137 gatccttttttggattgaagggagctcta 165
           ||||||| |||||||||||||||||||||
Sbjct: 154 gatccttgtttggattgaagggagctcta 182




>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
           (papaya)
          Length = 194

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 138 atccttttttggattgaagggagctcta 165
           |||||| |||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctcta 182




>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
          Length = 165

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 137 gatccttttttggattgaagggagctct 164
           |||| |||||||||||||||||||||||
Sbjct: 138 gatctttttttggattgaagggagctct 165