miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 85.7 bits (43), Expect = 2e-16
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| ||||| ||| | | ||||| ||||||||||||||||||||
Sbjct: 12 ggagctccttgaagtccaatagaggatcttg-atgggtagattgagctgctgagctatgg 70
Query: 61 atcccacagtcctat 75
||||||||| |||||
Sbjct: 71 atcccacagccctat 85
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 113 gataggcttgtggcttgcatatttctggaccttcattacc 152
|||||||||||||||||||||| || ||| ||||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagcttcattacc 145
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 73.8 bits (37), Expect = 8e-13
Identities = 72/81 (88%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| ||||||||| || ||||| ||| ||||||| ||||||||
Sbjct: 12 ggagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagctatgg 70
Query: 61 atcccacagtcctatgtatca 81
|| |||||||||||| |||||
Sbjct: 71 at-ccacagtcctatctatca 90
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 61.9 bits (31), Expect = 3e-09
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| ||||| ||| | ||||| ||||||||||||| |||||
Sbjct: 12 ggagctccttgaagtccaatagagggtcttact-gggtagattgagctgctgacttatgg 70
Query: 61 atcccacagtcctat 75
||||||||| |||||
Sbjct: 71 atcccacagccctat 85
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 gataggcttgtggcttgcatat 134
||||||||||||||||||||||
Sbjct: 106 gataggcttgtggcttgcatat 127
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 61
|||||||||||||||||| ||||| | | ||| |||| |||||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgca-gggttgattgagctgccgagctatgga 71
Query: 62 tcccacagtccta 74
| |||||| ||||
Sbjct: 72 ttccacagcccta 84
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 54.0 bits (27), Expect = 7e-07
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| ||| | |||| | ||| || ||||||||||||| ||||||
Sbjct: 12 ggagctccttgaagtccaacagaagatctaac-aggttagattgagctgctgacctatgg 70
Query: 61 atcccacagtcctat 75
|| || ||| |||||
Sbjct: 71 attcctcagccctat 85
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 52.0 bits (26), Expect = 3e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 61
|||||||||||||||||| ||| | || || ||||| || |||||||||||||||| |
Sbjct: 1 gagctccttgaagtccaatagaagctcctgct-gggtagatcgagctgctgagctatgaa 59
Query: 62 tcccacagtcctat 75
|||||||| |||||
Sbjct: 60 tcccacagccctat 73
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 34 agggtaaattgagctgctgagctatggatcccacagtcctat 75
|||| ||||||||||||||| ||||||||||| || ||||||
Sbjct: 44 agggaaaattgagctgctgatctatggatccctcaatcctat 85
