miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgtg 33
|||||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctgtg 35
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 74 taaaagcacgaacagatcgataaacctctgcatccag 110
|||||||| ||| ||||||||||||||||||||||||
Sbjct: 51 taaaagcatgaatagatcgataaacctctgcatccag 87
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 68 gatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa subsp.
pekinensis
Length = 92
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 72 attaaaagcacgaacagatcgataaacctctgcatccag 110
|||||||||| |||||||||||||||||| |||||||||
Sbjct: 53 attaaaagcatgaacagatcgataaacctgtgcatccag 91
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctctt 27
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttgatcgatctctt 29
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 83 gaacagatcgataaacctctgcatccag 110
|||| |||||||||||||||||||||||
Sbjct: 63 gaaccgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 73 gatcgataaacctctgcatccag 95
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||| ||||||
Sbjct: 3 ctggaggcagcggttcatcgatcttttcctg 33
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 80 cacgaacagatcgataaacctctgcatccag 110
||||||| |||||||||||||||||||||||
Sbjct: 60 cacgaaccgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||||||||||
Sbjct: 3 ctggatgcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgtg 33
||||||||||||||||||||||| ||||||||
Sbjct: 3 ctggaggcagcggttcatcgatcaattcctgtg 35
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 75 aaaagcacgaacagatcgataaacctctgcatccag 110
||||||| ||| |||||||||||||||||||||||
Sbjct: 55 aaaagcaagaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||| ||||||
Sbjct: 3 ctggatgcagcggttcatcgatctgttcctg 33
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 109 gatcgataaacctctgcatccag 131
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 135 gatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 136 gatcgataaacctctgcatccag 158
