miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 79.8 bits (40), Expect = 1e-14
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 61
|||||||||||||||||| ||||||||||||||||| || |||||| || ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 62 tccacagtccta 73
||||||| ||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 65.9 bits (33), Expect = 2e-10
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 100 tgcggcttgcatatgttaggagctttattacctctttgttttatctttctttggattgaa 159
|||||||||||||| | |||||||||||||||| |||| |||||| |||||||||||
Sbjct: 98 tgcggcttgcatatctcaggagctttattacct-aatgttagatctttttttggattgaa 156
Query: 160 gggagctct 168
|||||||||
Sbjct: 157 gggagctct 165
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 65.9 bits (33), Expect = 2e-10
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatgga 60
||||||||||||||||||| ||||| | |||| ||||| || |||||||| | |||||||
Sbjct: 12 ggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga 71
Query: 61 ttccacagtccta 73
||||||||||||
Sbjct: 72 -tccacagtccta 83
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 91 ggataggcttgcggcttgcatatgttaggagctttatt 128
||||||| ||||||||||||||| | ||||||||||||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttatt 134
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 65.9 bits (33), Expect = 2e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatgga 60
||||||||||||||||||| ||||||| ||| ||||| || ||||||||| |||||||
Sbjct: 12 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 71
Query: 61 ttccacagtccta 73
| |||||| ||||
Sbjct: 72 tcccacagcccta 84
Score = 60.0 bits (30), Expect = 1e-08
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 91 ggataggcttgcggcttgcatatgttaggagctttattacctctttgttttatctttctt 150
||||||||||| ||||||||||| | |||||||| ||||||| | | || ||| || ||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagcttcattacct-tgtattagatccttgtt 163
Query: 151 tggattgaagggagctct 168
||||||||||||||||||
Sbjct: 164 tggattgaagggagctct 181
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 60.0 bits (30), Expect = 1e-08
Identities = 58/65 (89%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 106 ttgcatatgttaggagctttatt--acctctttgttttatctttctttggattgaaggga 163
|||||||||| |||||||||||| ||| |||||||| ||| || |||||||||||||||
Sbjct: 124 ttgcatatgtcaggagctttattttacc-ctttgtttgatcattttttggattgaaggga 182
Query: 164 gctct 168
|||||
Sbjct: 183 gctct 187
Score = 50.1 bits (25), Expect = 1e-05
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatgga 60
||||||||||||||||||| ||| ||| | |||| || || ||||||||| |||||||
Sbjct: 12 ggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgga 71
Query: 61 ttccacagtccta 73
|||| ||| ||||
Sbjct: 72 ttcctcagcccta 84
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatgga 60
||||||||||||||||||| ||||| | || | ||||| || ||||||||| ||||||
Sbjct: 12 ggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgga 71
Query: 61 ttccacagtccta 73
| |||||| ||||
Sbjct: 72 tcccacagcccta 84
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 146 ttctttggattgaagggagctct 168
|||||||||||||||||||||||
Sbjct: 173 ttctttggattgaagggagctct 195
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 146 ttctttggattgaagggagctct 168
|||||||||||||||||||||||
Sbjct: 169 ttctttggattgaagggagctct 191
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 147 tctttggattgaagggagctct 168
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 147 tctttggattgaagggagctct 168
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 147 tctttggattgaagggagctct 168
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 147 tctttggattgaagggagctct 168
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
