miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 285 bits (144), Expect = 1e-76
Identities = 158/165 (95%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 63 cccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggagc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggagc 120
Query: 123 tttattacctaatgttagatcnnnnnnnggattgaagggagctct 167
||||||||||||||||||||| |||||||||||||||||
Sbjct: 121 tttattacctaatgttagatctttttttggattgaagggagctct 165
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 101 bits (51), Expect = 3e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatga 60
|||||||||||||||||||||||| | || || ||||||||| ||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 70
Query: 61 atcccacagccctat 75
|||||||||||||||
Sbjct: 71 atcccacagccctat 85
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 87.7 bits (44), Expect = 5e-17
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 100 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 159
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 106 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 165
Query: 160 ggagctcta 168
|||||||||
Sbjct: 166 ggagctcta 174
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 87.7 bits (44), Expect = 5e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatga 60
|||||||||||||||||||||||| | || | |||||||||| |||||||||| ||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 70
Query: 61 atcccacagccctatc 76
||||||||||||||||
Sbjct: 71 atcccacagccctatc 86
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 63.9 bits (32), Expect = 7e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 62
|||||||||||||||||||||| | | ||| |||| ||| ||||||| |||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 63 cccacagcccta 74
|||||||||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 56.0 bits (28), Expect = 2e-07
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatga 60
|||||||||||||||||||| ||||| || | || ||||| |||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgg 70
Query: 61 atcccacagccctatc 76
|| || ||||||||||
Sbjct: 71 attcctcagccctatc 86
