miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
           (sorghum)
          Length = 132

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 80  ggaatcgatcgataaacctctgcatccag 108
           |||||||||||||||||||||||||||||
Sbjct: 103 ggaatcgatcgataaacctctgcatccag 131




>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
           Group
          Length = 158

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 80  ggaatcgatcgataaacctctgcatccag 108
           |||||||||||||||||||||||||||||
Sbjct: 129 ggaatcgatcgataaacctctgcatccag 157




>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
           Indica Group
          Length = 159

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 80  ggaatcgatcgataaacctctgcatccag 108
           |||||||||||||||||||||||||||||
Sbjct: 130 ggaatcgatcgataaacctctgcatccag 158




>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
           (papaya)
          Length = 91

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 81  gaatcgatcgataaacctctgcatccag 108
           ||||||||||||||||||||||||||||
Sbjct: 63  gaatcgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
           (thale cress)
          Length = 91

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 81  gaatcgatcgataaacctctgcatccag 108
           ||||||||||||||||||||||||||||
Sbjct: 63  gaatcgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
           (castor bean)
          Length = 96

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 81  gaatcgatcgataaacctctgcatccag 108
           ||||||||||||||||||||||||||||
Sbjct: 68  gaatcgatcgataaacctctgcatccag 95




>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
          (barrel medic)
          Length = 90

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 1  ctggattcagcggttcatcgatctgttcc 29
          |||||| ||||||||||||||||||||||
Sbjct: 3  ctggatgcagcggttcatcgatctgttcc 31



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 81  gaatcgatcgataaacctctgcatccag 108
           |||||| |||||||||||||||||||||
Sbjct: 62  gaatcggtcgataaacctctgcatccag 89




>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
          Length = 133

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 80  ggaatcgatcgataaacctctgcatccag 108
           ||||||| |||||||||||||||||||||
Sbjct: 104 ggaatcggtcgataaacctctgcatccag 132




>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
           Japonica Group
          Length = 117

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 80  ggaatcgatcgataaacctctgcatccag 108
           ||||||||||||||| |||||||||||||
Sbjct: 88  ggaatcgatcgataagcctctgcatccag 116




>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
           (thale cress)
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 81  gaatcgatcgataaacctctgcatccag 108
           |||| |||||||||||||||||||||||
Sbjct: 60  gaatagatcgataaacctctgcatccag 87




>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
          Length = 91

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cgatcgataaacctctgcatccag 108
           ||||||||||||||||||||||||
Sbjct: 67  cgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
           trichocarpa
          Length = 91

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cgatcgataaacctctgcatccag 108
           ||||||||||||||||||||||||
Sbjct: 67  cgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 81  gaatcgatcgataaacctctgcatccag 108
           |||||| |||||||||||||||||||||
Sbjct: 60  gaatcggtcgataaacctctgcatccag 87