miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacaagtaaataccgatctcattatgaaatcggacactagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacaagtaaataccgatctcattatgaaatcggacactagtg 64
Query: 61 gcgtacagagtagtcaagc 79
|||||||||||||||||||
Sbjct: 65 gcgtacagagtagtcaagc 83
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 69.9 bits (35), Expect = 4e-12
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacaagtaaataccgatctcattatgaaatcggacactagtg 60
|||||||||||||||||||||||| ||| | |||| | || |||||| ||||||||
Sbjct: 5 gcctggctccctgtatgccacaagaaaacatcgatttagtttcaaaatcgatcactagtg 64
Query: 61 gcgtacagagtagtcaagc 79
|||||||||||||||||||
Sbjct: 65 gcgtacagagtagtcaagc 83
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacaagta 26
||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacaagta 30
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacaagtaaataccgatct 37
|||||||||||||||||||||||| ||| ||| ||||
Sbjct: 5 gcctggctccctgtatgccacaagcaaagaccaatct 41
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacaag 24
||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacaag 28
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacaag 24
||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacaag 28
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacaagtaaataccgat 35
||||||||||||||||||||| ||| ||||||||
Sbjct: 5 gcctggctccctgtatgccacgagtggataccgat 39
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 4 gcctggctccctgtatgccaca 25
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
